Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2021-05-26-ChIP-data-uniform-processing-last-batch

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]PEInsertDistFromBAM.sh2021-05-29 04:06 3.5K 
[ ]RPM-RPKM-files.tar.gz2021-05-26 12:00 5.9G 
[ ]TSS-250bp-350bp.Candida.RPKM.files2021-05-29 04:06 676  
[ ]TSS-250bp-350bp.Candida.RPM.files2021-05-29 04:06 671  
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:06 761  
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:06 756  
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 716  
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 711  
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 791  
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 786  
[ ]TSS-250bp-350bp.sacCer3.RPKM.files2021-05-29 04:06 631  
[ ]TSS-250bp-350bp.sacCer3.RPM.files2021-05-29 04:06 626  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2021-05-29 04:06 721  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2021-05-29 04:06 716  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:06 766  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:06 761  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 721  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 716  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2021-05-29 04:06 676  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2021-05-29 04:06 671  
[ ]TSS-upstream500bp.Candida.RPKM.files2021-05-29 04:06 686  
[ ]TSS-upstream500bp.Candida.RPM.files2021-05-29 04:06 681  
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:06 771  
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:06 766  
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 726  
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 721  
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 801  
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 796  
[ ]TSS-upstream500bp.sacCer3.RPKM.files2021-05-29 04:06 641  
[ ]TSS-upstream500bp.sacCer3.RPM.files2021-05-29 04:06 636  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2021-05-29 04:06 731  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2021-05-29 04:06 726  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:06 776  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:06 771  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 731  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 726  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2021-05-29 04:06 686  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2021-05-29 04:06 681  
[TXT]bedRPKMfromBAM.sh2021-05-29 04:06 188K 
[TXT]columnrename.sh2021-05-29 04:06 3.4K 
[ ]commands-last_small_batch.config2021-05-28 10:39 669  
[TXT]countlines.sh2021-05-29 04:06 531  
[ ]cumulativeGeneProfiles.Candida.files2021-05-29 04:06 651  
[ ]cumulativeGeneProfiles.sacCer3.files2021-05-29 04:06 501  
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files2021-05-29 04:06 661  
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.smooth10.table.gz2021-05-29 04:12 7.5K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.table.gz2021-05-29 04:12 7.5K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.smooth10.table.gz2021-05-29 04:12 15K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.table.gz2021-05-29 04:12 15K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files2021-05-29 04:06 621  
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.smooth10.table.gz2021-05-29 04:12 7.5K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.table.gz2021-05-29 04:12 7.5K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.smooth10.table.gz2021-05-29 04:12 15K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.table.gz2021-05-29 04:12 15K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files2021-05-29 04:06 511  
[TXT]filterchrM.sh2021-05-29 04:06 3.1K 
[ ]genes.Candida.RPKM.files2021-05-29 04:06 616  
[ ]genes.Candida.RPM.files2021-05-29 04:06 611  
[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:06 711  
[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:06 706  
[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 666  
[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 661  
[ ]genes.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 741  
[ ]genes.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 736  
[ ]genes.sacCer3.RPKM.files2021-05-29 04:06 571  
[ ]genes.sacCer3.RPM.files2021-05-29 04:06 566  
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2021-05-29 04:06 661  
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2021-05-29 04:06 656  
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:06 706  
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:06 701  
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 661  
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 656  
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2021-05-29 04:06 616  
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2021-05-29 04:06 611  
[ ]genes_500bp_ext.Candida.RPKM.files2021-05-29 04:06 666  
[ ]genes_500bp_ext.Candida.RPM.files2021-05-29 04:06 661  
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:06 761  
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:06 756  
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 716  
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 711  
[ ]genes_500bp_ext.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 791  
[ ]genes_500bp_ext.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 786  
[ ]genes_500bp_ext.sacCer3.RPKM.files2021-05-29 04:06 621  
[ ]genes_500bp_ext.sacCer3.RPM.files2021-05-29 04:06 616  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2021-05-29 04:06 711  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2021-05-29 04:06 706  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:06 756  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:06 751  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:06 711  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:06 706  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2021-05-29 04:06 666  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2021-05-29 04:06 661  
[TXT]makewiggle.sh2021-05-29 04:06 17K 
[TXT]map.sh2021-05-29 04:06 7.9K 
[TXT]samtools-index.sh2021-05-29 04:06 2.6K 
[TXT]wigtobigwig.sh2021-05-29 04:06 18K 
[ ]z2021-05-29 04:11 3.5K 
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