Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2020-12-20-ChIP-data-uniform-processing

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]2020-12-20-ChIP-data-uniform-processing.pdf2020-12-22 12:02 439K 
[ ]2020-12-20-ChIP-data-uniform-processing.pptx2020-12-22 11:44 73K 
[DIR]190429L01_exp190220_MK555_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190429L03_exp190220_MK645_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190429L04_exp190220_MK653_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190429L05_exp190220_MK554_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190429L06_exp190221_MK637_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190429L07_exp190221_MK627_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190722L65_MS521_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190722L66_MS529_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190722L67_MS527_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190722L68_MS522_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190722L69_MS524_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190722L70_MS528_SCEG_AB101/2025-04-21 12:58 -  
[DIR]190722L71_MS523_SCEG_AB101/2025-04-21 12:58 -  
[DIR]191002L02_exp190916_MK555_SCEG_AB101/2025-04-21 12:58 -  
[DIR]191002L03_exp190918_MK582_SCEG_AB101/2025-04-21 12:58 -  
[DIR]191002L04_exp190920_MK820_SCEG_AB101/2025-04-21 12:58 -  
[DIR]191002L05_exp190918_MK532_SCEG_AB101/2025-04-21 12:58 -  
[DIR]191002L06_exp190916_MK554_SCEG_AB101/2025-04-21 12:58 -  
[DIR]191002L08_exp190916_MK812_SCEG_AB101/2025-04-21 12:58 -  
[DIR]191113L01_MS534_SCEG_AB107/2025-04-21 12:58 -  
[DIR]191113L02_MS535_SCEG_AB107/2025-04-21 12:58 -  
[DIR]191113L03_MS536c1_SCEG_AB107/2025-04-21 12:58 -  
[DIR]191113L04_MS536c2_SCEG_AB107/2025-04-21 12:58 -  
[DIR]191113L05_MS537c1_SCEG_AB107/2025-04-21 12:58 -  
[DIR]191113L06_MS537c2_SCEG_AB107/2025-04-21 12:58 -  
[DIR]191113L07_MS538c1_SCEG_AB107/2025-04-21 12:58 -  
[DIR]191113L08_MS538c2_SCEG_AB107/2025-04-21 12:58 -  
[DIR]191127L01_exp1911_MK554_SCEG_alpha-factor_AB101/2025-04-21 12:58 -  
[DIR]200218L49_MS521_SCEG_AB101/2025-04-21 12:58 -  
[DIR]200218L50_MS522_SCEG_AB101/2025-04-21 12:58 -  
[DIR]200218L51_MS523_SCEG_AB101/2025-04-21 12:58 -  
[DIR]200218L52_MS524_SCEG_AB101/2025-04-21 12:58 -  
[DIR]200218L53_MS528_SCEG_AB101/2025-04-21 12:58 -  
[DIR]200218L54_MS529_SCEG_AB101/2025-04-21 12:58 -  
[DIR]200218L55_exp200115_MK846_SCD_G1_DMSO_AB01/2025-04-21 12:58 -  
[DIR]200218L56_exp200115_MK846_SCD_G1_CMK_AB01/2025-04-21 12:58 -  
[DIR]200218L57_exp200115_MK846_SCD_G1_RAPA_AB01/2025-04-21 12:58 -  
[DIR]200218L58_exp200115_MK846_SCD_G1_RAPA_CMK_AB01/2025-04-21 12:58 -  
[DIR]200218L59_exp200115_MK846_SCD_G1_DMSO_AB107/2025-04-21 12:58 -  
[DIR]200218L60_exp200115_MK846_SCD_G1_CMK_AB107/2025-04-21 12:58 -  
[DIR]200218L61_exp200115_MK846_SCD_G1_RAPA_AB107/2025-04-21 12:58 -  
[DIR]200218L62_exp200115_MK846_SCD_G1_RAPA_CMK_AB107/2025-04-21 12:58 -  
[DIR]200526L73_exp2005_MK820_SCEG_AB101/2025-04-21 12:58 -  
[DIR]200709L09_exp200625_MK846_SCD_DMSO_AB107/2025-04-21 12:58 -  
[DIR]200709L10_exp200625_MK846_SCD_RAPA-30min_AB107/2025-04-21 12:58 -  
[DIR]200709L11_exp200625_MK846_SCD_CMK-02.5min_AB107/2025-04-21 12:58 -  
[DIR]200709L12_exp200625_MK846_SCD_CMK-05min_AB107/2025-04-21 12:58 -  
[DIR]200709L13_exp200625_MK846_SCD_CMK-15min_AB107/2025-04-21 12:58 -  
[DIR]200808L25_MK689_SCEG_AB101/2025-04-21 12:58 -  
[DIR]200808L26_MK711_SCEG_AB101/2025-04-21 12:58 -  
[DIR]200925L01_exp200916_MK918_SCD_DMSO_AB107/2025-04-21 12:58 -  
[DIR]200925L02_exp200916_MK918_SCD_NMPP1-01min_AB107/2025-04-21 12:58 -  
[DIR]200925L03_exp200916_MK918_SCD_NMPP1-03min_AB107/2025-04-21 12:58 -  
[DIR]200925L04_exp200916_MK918_SCD_NMPP1-10min_AB107/2025-04-21 12:58 -  
[DIR]200925L05_exp200917_MK919_SCD_DMSO_AB107/2025-04-21 12:58 -  
[DIR]200925L06_exp200917_MK919_SCD_CMK-00min-control_AB107/2025-04-21 12:58 -  
[DIR]200925L06_exp200917_MK919_SCD_CMK-01min_AB107/2025-04-21 12:58 -  
[DIR]200925L07_exp200917_MK919_SCD_CMK-03min_AB107/2025-04-21 12:58 -  
[DIR]200925L08_exp200917_MK919_SCD_CMK-10min_AB107/2025-04-21 12:58 -  
[DIR]201119L01_exp201103_MK918_SCD_DMSO_AB107/2025-04-21 12:58 -  
[DIR]201119L02_exp201103_MK918_SCD_1NMPP1-01min_AB107/2025-04-21 12:58 -  
[DIR]201119L03_exp201103_MK918_SCD_1NMPP1-03min_AB107/2025-04-21 12:58 -  
[DIR]201119L04_exp201103_MK918_SCD_1NMPP1-10min_AB107/2025-04-21 12:58 -  
[DIR]201119L05_exp201104_MK978_SCD_DMSO_AB107/2025-04-21 12:58 -  
[DIR]201119L06_exp201104_MK978_SCD_1NMPP1-01min_AB107/2025-04-21 12:58 -  
[DIR]201119L07_exp201104_MK978_SCD_1NMPP1-10min_AB107/2025-04-21 12:58 -  
[DIR]201119L08_exp201105_MK846_SCD_DMSO_AB107/2025-04-21 12:58 -  
[DIR]201119L09_exp201105_MK846_SCD_RAPA-30min_AB107/2025-04-21 12:58 -  
[DIR]201119L10_exp200916_MK918_SCD_DMSO_AB03/2025-04-21 12:58 -  
[DIR]201119L11_exp200916_MK918_SCD_1NMPP1-01min_AB03/2025-04-21 12:58 -  
[DIR]201119L12_exp200916_MK918_SCD_1NMPP1-03min_AB03/2025-04-21 12:58 -  
[DIR]201119L13_exp200916_MK918_SCD_1NMPP1-10min_AB03/2025-04-21 12:58 -  
[DIR]201119L14_exp201103_MK918_SCD_DMSO_AB03/2025-04-21 12:58 -  
[DIR]201119L15_exp201103_MK918_SCD_1NMPP1-01min_AB03/2025-04-21 12:58 -  
[DIR]201119L16_exp201103_MK918_SCD_1NMPP1-03min_AB03/2025-04-21 12:58 -  
[DIR]201119L17_exp201103_MK918_SCD_1NMPP1-10min_AB03/2025-04-21 12:58 -  
[DIR]201119L18_exp201105_MK679_SCGE_AB101/2025-04-21 12:58 -  
[DIR]201119L19_exp201105_MK711_SCGE_AB101/2025-04-21 12:58 -  
[DIR]IDR/2020-12-22 11:55 -  
[ ]MK554_SCEG_AB101.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:56 167K 
[ ]MK554_SCEG_AB101.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 81K 
[ ]MK554_SCEG_AB101.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 81K 
[ ]MK689_SCEG_AB101.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:55 143K 
[ ]MK689_SCEG_AB101.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:52 152K 
[ ]MK689_SCEG_AB101.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:52 150K 
[ ]MK711_SCEG_AB101.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:55 145K 
[ ]MK711_SCEG_AB101.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:52 146K 
[ ]MK711_SCEG_AB101.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:52 146K 
[ ]MK820_SCEG_AB101.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:57 102K 
[ ]MK820_SCEG_AB101.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 105K 
[ ]MK820_SCEG_AB101.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 105K 
[ ]MS522_SCEG_AB101.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:57 18K 
[ ]MS522_SCEG_AB101.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 17K 
[ ]MS522_SCEG_AB101.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 17K 
[ ]MS523_SCEG_AB101.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:56 81K 
[ ]MS523_SCEG_AB101.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 41K 
[ ]MS523_SCEG_AB101.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 41K 
[ ]MS524_SCEG_AB101.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:56 55K 
[ ]MS524_SCEG_AB101.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 22K 
[ ]MS524_SCEG_AB101.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 21K 
[ ]MS528_SCEG_AB101.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:56 46K 
[ ]MS528_SCEG_AB101.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:52 76K 
[ ]MS528_SCEG_AB101.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 77K 
[ ]MS529_SCEG_AB101.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:56 149K 
[ ]MS529_SCEG_AB101.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 99K 
[ ]MS529_SCEG_AB101.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 99K 
[ ]MS536_SCEG_AB107.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:57 60K 
[ ]MS536_SCEG_AB107.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 81K 
[ ]MS536_SCEG_AB107.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 82K 
[ ]MS537_SCEG_AB107.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:57 78K 
[ ]MS537_SCEG_AB107.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 93K 
[ ]MS537_SCEG_AB107.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 93K 
[ ]MS538_SCEG_AB107.ChIP.merged.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:57 69K 
[ ]MS538_SCEG_AB107.ChIP.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 94K 
[ ]MS538_SCEG_AB107.ChIP.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2020-12-22 10:53 95K 
[TXT]PEInsertDistFromBAM.sh2021-01-03 08:21 22K 
[ ]RPM-RPKM-files-additional.tar.gz2021-01-04 02:19 263M 
[ ]RPM-RPKM-files.tar.gz2021-01-03 09:46 253M 
[ ]SAMstats.2x36mers.table.gz2020-12-22 08:25 1.2K 
[ ]SAMstats.files2020-12-22 06:55 33K 
[ ]SAMstats.nochrM.1x36mers.table.gz2020-12-22 08:25 1.3K 
[ ]SAMstats.nochrM.table.gz2020-12-22 08:25 1.3K 
[TXT]SAMstats.sh2021-01-03 08:21 83K 
[ ]SAMstats.table.gz2020-12-22 08:25 2.5K 
[ ]SAMstats.tar.gz2020-12-22 08:25 7.7K 
[ ]TSS-100bp-100bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2021-01-04 00:38 11K 
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[ ]TSS-100bp-100bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2021-01-04 00:38 11K 
[ ]TSS-100bp-100bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.table.gz2021-01-04 02:18 3.3M 
[ ]TSS-100bp-100bp.2x36mers.unique.sacCer3.RPKM.files2021-01-04 00:38 11K 
[ ]TSS-100bp-100bp.2x36mers.unique.sacCer3.RPKM.table.gz2021-01-04 02:18 3.4M 
[ ]TSS-100bp-100bp.2x36mers.unique.sacCer3.RPM.files2021-01-04 00:38 10K 
[ ]TSS-100bp-100bp.2x36mers.unique.sacCer3.RPM.table.gz2021-01-04 02:18 3.4M 
[ ]TSS-150bp-100bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2021-01-04 00:38 11K 
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[ ]TSS-150bp-100bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2021-01-04 00:38 11K 
[ ]TSS-150bp-100bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.table.gz2021-01-04 02:18 3.4M 
[ ]TSS-150bp-100bp.2x36mers.unique.sacCer3.RPKM.files2021-01-04 00:38 11K 
[ ]TSS-150bp-100bp.2x36mers.unique.sacCer3.RPKM.table.gz2021-01-04 02:18 3.5M 
[ ]TSS-150bp-100bp.2x36mers.unique.sacCer3.RPM.files2021-01-04 00:39 10K 
[ ]TSS-150bp-100bp.2x36mers.unique.sacCer3.RPM.table.gz2021-01-04 02:18 3.4M 
[ ]TSS-150bp-150bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2021-01-04 00:39 11K 
[ ]TSS-150bp-150bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.table.gz2021-01-04 02:18 3.4M 
[ ]TSS-150bp-150bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2021-01-04 00:39 11K 
[ ]TSS-150bp-150bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.table.gz2021-01-04 02:18 3.4M 
[ ]TSS-150bp-150bp.2x36mers.unique.sacCer3.RPKM.files2021-01-04 00:39 11K 
[ ]TSS-150bp-150bp.2x36mers.unique.sacCer3.RPKM.table.gz2021-01-04 02:18 3.5M 
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[ ]TSS-150bp-150bp.2x36mers.unique.sacCer3.RPM.table.gz2021-01-04 02:18 3.4M 
[ ]TSS-200bp-100bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2021-01-04 00:39 11K 
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[ ]TSS-200bp-100bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2021-01-04 00:39 11K 
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[ ]TSS-250bp-100bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2021-01-04 00:40 11K 
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[ ]TSS-250bp-100bp.2x36mers.unique.sacCer3.RPM.files2021-01-04 00:40 10K 
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[ ]TSS-250bp-150bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2021-01-04 00:40 11K 
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[ ]TSS-250bp-150bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2021-01-04 00:41 11K 
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[ ]TSS-250bp-350bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2021-01-03 08:21 11K 
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