python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_2_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_2_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCD-37.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCD-37.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS86_SCD-37.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS86_SCD-37.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCD-37.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCD-37.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS86_SCD-37.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS86_SCD-37.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS86_SCD-37.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS86_SCD-37.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS1_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS55_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS86_SCD-37-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS86_SCD-37-vs-MS1_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS86_SCD-37-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS86_SCD-37-vs-MS55_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_5hr-vs-MS55_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_2_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_2_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCD-37.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCD-37.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS86_SCD-37.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS86_SCD-37.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCD-37.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCD-37.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS86_SCD-37.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS86_SCD-37.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS86_SCD-37.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS86_SCD-37.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS1_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCD-37-vs-MS55_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS86_SCD-37-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS86_SCD-37-vs-MS1_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS86_SCD-37-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS86_SCD-37-vs-MS55_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_500pp_upstream.counts.int.MS1_SCGE_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_500pp_upstream.counts.int.MS1_SCGE_5hr-vs-MS55_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_2_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_2_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCD-37.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCD-37.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS86_SCD-37.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS86_SCD-37.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCD-37.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCD-37.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS86_SCD-37.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS86_SCD-37.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS86_SCD-37.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS86_SCD-37.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS1_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS55_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS86_SCD-37-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS86_SCD-37-vs-MS1_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS86_SCD-37-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS86_SCD-37-vs-MS55_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_5hr-vs-MS55_SCGE_5hr.fixed.p-adj-0.05 -padj -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_2_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_2_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCD-37.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCD-37.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS86_SCD-37.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS86_SCD-37.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCD-37.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCD-37.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS86_SCD-37.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS86_SCD-37.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS1_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS55_SCGE_2_5hr-vs-MS55_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS86_SCD-37.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS86_SCD-37.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS1_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCD-37-vs-MS55_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS86_SCD-37-vs-MS1_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS86_SCD-37-vs-MS1_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS86_SCD-37-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS86_SCD-37-vs-MS55_SCGE_5hr.fixed.p-val-0.05 -switch &
python ~/code/DESeq/filterDESeq2Output.py TSS_1000pp_upstream.counts.int.MS1_SCGE_5hr-vs-MS55_SCGE_5hr.fixed.txt 0.05 TSS_1000pp_upstream.counts.int.MS1_SCGE_5hr-vs-MS55_SCGE_5hr.fixed.p-val-0.05 -switch &