python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.Candida.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_features.genes 0 1 2 3 500 cumulativeGeneProfiles.Candida.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.Candida.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_features.genes 0 1 2 3 1000 cumulativeGeneProfiles.Candida.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.Candida.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_features.genes 0 1 2 3 500 cumulativeGeneProfiles.Candida.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.Candida.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_features.genes 0 1 2 3 1000 cumulativeGeneProfiles.Candida.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_features.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_features.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_features.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_features.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.1000bp.table -normalize
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.smooth10.table -normalize -smooth 10
python /oak/stanford/groups/akundaje/marinovg/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.1000bp.smooth10.table -normalize -smooth 10