python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L01_MS205_SCD_RAPA60_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2020-10-20-200930L01_MS205_SCD_RAPA60_input.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L01_MS205_SCD_RAPA60_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2020-10-20-200930L01_MS205_SCD_RAPA60_input.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L02_MS348_SCD_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2020-10-20-200930L02_MS348_SCD_input.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L02_MS348_SCD_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2020-10-20-200930L02_MS348_SCD_input.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L03_MS666_SCD_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2020-10-20-200930L03_MS666_SCD_input.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L03_MS666_SCD_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2020-10-20-200930L03_MS666_SCD_input.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L04_MS667_SCD_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2020-10-20-200930L04_MS667_SCD_input.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L04_MS667_SCD_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2020-10-20-200930L04_MS667_SCD_input.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L05_MS205_SCD_RAPA60_AB01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2020-10-20-200930L05_MS205_SCD_RAPA60_AB01.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L05_MS205_SCD_RAPA60_AB01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2020-10-20-200930L05_MS205_SCD_RAPA60_AB01.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L06_MS348_SCD_AB01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2020-10-20-200930L06_MS348_SCD_AB01.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L06_MS348_SCD_AB01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2020-10-20-200930L06_MS348_SCD_AB01.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L07_MS666_SCD_AB01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2020-10-20-200930L07_MS666_SCD_AB01.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L07_MS666_SCD_AB01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2020-10-20-200930L07_MS666_SCD_AB01.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L08_MS667_SCD_AB01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2020-10-20-200930L08_MS667_SCD_AB01.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2020-10-20-200930L08_MS667_SCD_AB01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2020-10-20-200930L08_MS667_SCD_AB01.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength