Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2020-10-26-ChIP-data-rerun

[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory  -  
[TXT]PEInsertDistFromBAM.sh2020-10-27 06:24 5.7K 
[   ]RPM-RPKM-files.tar.gz2020-10-27 07:51 56M 
[   ]SAMstats.2x36mers.ERMTOC.table2020-10-27 07:39 1.9K 
[   ]SAMstats.2x36mers.table2020-10-27 07:39 1.6K 
[   ]SAMstats.files2020-10-27 07:39 8.3K 
[   ]SAMstats.nochrM.1x36mers.table2020-10-27 07:39 1.8K 
[   ]SAMstats.nochrM.table2020-10-27 07:39 1.8K 
[TXT]SAMstats.sh2020-10-27 06:24 22K 
[   ]SAMstats.table2020-10-27 07:39 5.4K 
[   ]SAMstats.tar.gz2020-10-27 07:39 2.2K 
[   ]TSS-250bp-350bp.Candida.RPKM.files2020-10-27 06:24 1.1K 
[   ]TSS-250bp-350bp.Candida.RPKM.table2020-10-27 07:50 1.0M 
[   ]TSS-250bp-350bp.Candida.RPM.files2020-10-27 06:24 1.1K 
[   ]TSS-250bp-350bp.Candida.RPM.table2020-10-27 07:50 1.0M 
[   ]TSS-250bp-350bp.S_pombe.RPKM.files2020-10-27 06:24 0  
[   ]TSS-250bp-350bp.S_pombe.RPM.files2020-10-27 06:24 0  
[   ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2020-10-27 06:24 1.3K 
[   ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2020-10-27 07:50 680K 
[   ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2020-10-27 06:24 1.3K 
[   ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2020-10-27 07:50 681K 
[   ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2020-10-27 06:24 0  
[   ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2020-10-27 06:24 0  
[   ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2020-10-27 06:24 1.2K 
[   ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2020-10-27 07:50 700K 
[   ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2020-10-27 06:24 1.2K 
[   ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2020-10-27 07:50 700K 
[   ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2020-10-27 06:24 0  
[   ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2020-10-27 06:24 0  
[   ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2020-10-27 06:24 1.3K 
[   ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2020-10-27 07:50 675K 
[   ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2020-10-27 06:24 1.3K 
[   ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2020-10-27 07:50 675K 
[   ]TSS-250bp-350bp.sacCer3.RPKM.files2020-10-27 06:24 1.1K 
[   ]TSS-250bp-350bp.sacCer3.RPKM.table2020-10-27 07:50 1.1M 
[   ]TSS-250bp-350bp.sacCer3.RPM.files2020-10-27 06:24 1.1K 
[   ]TSS-250bp-350bp.sacCer3.RPM.table2020-10-27 07:50 1.1M 
[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2020-10-27 06:24 1.2K 
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[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.S_pombe.RPM.files2020-10-27 06:24 0  
[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2020-10-27 06:24 1.3K 
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[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2020-10-27 06:24 1.3K 
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[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2020-10-27 06:24 0  
[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2020-10-27 06:24 0  
[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2020-10-27 06:24 1.2K 
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[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2020-10-27 06:24 1.2K 
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[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2020-10-27 06:24 1.1K 
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[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2020-10-27 07:50 1.1M 
[   ]TSS-upstream500bp.Candida.RPKM.files2020-10-27 06:24 1.2K 
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[   ]TSS-upstream500bp.S_pombe.RPKM.files2020-10-27 06:24 0  
[   ]TSS-upstream500bp.S_pombe.RPM.files2020-10-27 06:24 0  
[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2020-10-27 06:24 1.3K 
[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2020-10-27 07:50 616K 
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[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2020-10-27 07:50 617K 
[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2020-10-27 06:24 0  
[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2020-10-27 06:24 0  
[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2020-10-27 06:24 1.2K 
[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2020-10-27 07:50 673K 
[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2020-10-27 06:24 1.2K 
[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2020-10-27 07:50 673K 
[   ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2020-10-27 06:24 0  
[   ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2020-10-27 06:24 0  
[   ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2020-10-27 06:24 1.3K 
[   ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2020-10-27 07:50 648K 
[   ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2020-10-27 06:24 1.3K 
[   ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2020-10-27 07:50 648K 
[   ]TSS-upstream500bp.sacCer3.RPKM.files2020-10-27 06:24 1.1K 
[   ]TSS-upstream500bp.sacCer3.RPKM.table2020-10-27 07:50 1.1M 
[   ]TSS-upstream500bp.sacCer3.RPM.files2020-10-27 06:24 1.1K 
[   ]TSS-upstream500bp.sacCer3.RPM.table2020-10-27 07:50 1.1M 
[   ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2020-10-27 06:24 1.2K 
[   ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2020-10-27 07:50 1.0M 
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[   ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2020-10-27 07:50 1.0M 
[   ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.S_pombe.RPKM.files2020-10-27 06:24 0  
[   ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.S_pombe.RPM.files2020-10-27 06:24 0  
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[   ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2020-10-27 06:24 0  
[   ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2020-10-27 06:24 1.2K 
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[   ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2020-10-27 07:50 1.1M 
[TXT]bedRPKMfromBAM.sh2020-10-27 06:24 307K 
[TXT]columnrename.sh2020-10-27 06:24 5.6K 
[   ]commands.config2020-10-27 06:24 1.2K 
[TXT]countlines.sh2020-10-27 06:24 940  
[   ]cumulativeGeneProfiles.Candida.500bp.smooth10.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.Candida.500bp.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.Candida.1000bp.smooth10.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.Candida.1000bp.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.Candida.files2020-10-27 06:24 1.1K 
[   ]cumulativeGeneProfiles.S_pombe.files2020-10-27 06:24 0  
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2020-10-27 07:44 339K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2020-10-27 07:44 668K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2020-10-27 07:44 663K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2020-10-27 07:44 339K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2020-10-27 07:44 679K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.sacCer3.files2020-10-27 06:24 892  
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table2020-10-27 07:44 117K 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table2020-10-27 07:44 114K 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table2020-10-27 07:44 252K 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table2020-10-27 07:44 242K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table2020-10-27 07:46 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table2020-10-27 07:46 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.smooth10.table2020-10-27 07:46 679K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table2020-10-27 07:46 679K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files2020-10-27 06:24 1.1K 
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[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.smooth10.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.table2020-10-27 07:46 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.smooth10.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2020-10-27 07:44 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.500bp.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2020-10-27 07:44 670K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.1000bp.table2020-10-27 07:45 664K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2020-10-27 07:44 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.500bp.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.1000bp.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files2020-10-27 06:24 1.1K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.smooth10.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.smooth10.table2020-10-27 07:46 679K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.table2020-10-27 07:45 679K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.smooth10.table2020-10-27 07:44 134K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.table2020-10-27 07:44 127K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.1000bp.smooth10.table2020-10-27 07:45 270K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.1000bp.table2020-10-27 07:44 256K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.smooth10.table2020-10-27 07:46 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.smooth10.table2020-10-27 07:46 679K 
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[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2020-10-27 07:45 339K 
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[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2020-10-27 07:45 339K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2020-10-27 07:45 679K 
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