python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.0.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.0.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.0.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.0.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.0.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.0.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.0.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.0.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.0.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.0.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.0.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.0.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.0.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.0.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.0.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.0.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.0.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.0.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.0.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.0.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.1.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.1.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.1.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.1.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.1.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.1.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.1.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.1.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.1.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.1.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.1.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.1.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.1.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.1.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.1.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.1.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.1.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.1.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.1.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files1 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.1.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.2.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.2.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.2.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.2.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.2.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.2.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.2.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.2.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.2.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.2.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.2.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.2.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.2.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.2.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.2.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.2.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.2.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.2.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.2.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files2 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.2.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.3.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.3.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.3.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.3.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.3.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.3.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.3.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.3.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.3.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.3.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.3.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.3.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.3.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.3.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.3.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.3.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.3.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.3.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.3.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files3 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.3.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.4.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.4.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.4.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.4.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.4.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.4.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.4.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.4.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.4.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.4.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.4.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.4.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.4.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.4.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.4.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.4.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.4.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.4.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.4.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files4 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.4.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.5.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.5.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.5.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.5.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.5.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.5.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.5.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.5.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.5.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.5.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.5.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.5.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.5.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.5.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.5.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.5.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.5.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.5.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.5.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files5 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.5.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.6.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.6.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.6.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.6.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.6.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.6.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.6.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.6.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.6.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.6.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.6.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.6.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.6.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.6.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.6.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.6.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.6.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.6.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.6.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files6 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.6.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.7.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.7.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.7.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.7.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.7.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.7.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.7.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.7.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.7.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.7.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.7.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.7.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.7.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.7.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.7.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.7.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.7.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.7.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.7.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files7 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.7.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.8.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.8.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.8.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.8.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.8.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.8.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.8.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.8.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.8.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.8.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.8.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.8.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.8.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.8.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.8.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.8.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.8.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.8.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.8.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files8 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.8.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.9.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.9.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.9.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.9.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.9.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.9.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.9.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.9.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.9.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.9.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.9.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.9.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.9.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.9.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.9.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.9.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.9.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.9.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.9.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files9 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.9.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.10.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.10.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.10.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.10.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.10.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.10.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.10.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.10.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.10.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.10.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.10.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.10.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.10.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.10.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.10.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.10.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.10.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.10.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.10.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files10 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.10.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.11.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.11.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.11.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.11.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.11.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.11.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.11.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.11.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.11.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.11.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.11.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.11.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.11.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.11.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.11.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.11.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.11.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.11.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.11.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files11 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.11.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.12.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.12.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.12.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.12.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.12.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.12.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.12.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.12.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.12.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.12.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.12.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.12.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.12.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.12.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.12.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.12.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.12.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.12.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.12.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files12 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.12.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.13.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.13.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.13.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.13.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.13.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.13.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.500bp.smooth10.13.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.1000bp.smooth10.13.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.13.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.13.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile1 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.13.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.genes.quintile5 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.13.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.13.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.13.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.500bp.smooth10.13.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.protein_coding.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.protein_coding.1000bp.smooth10.13.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.13.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.13.table -normalize
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 500 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.500bp.smooth10.13.table -normalize -smooth 10
python ~/code/cumulativeGeneProfiles.py cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.files13 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.rRNA.RDN37.genes 0 1 2 3 1000 cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.mindPoint.sacCer3.rRNA.RDN37.1000bp.smooth10.13.table -normalize -smooth 10