Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2020-01-03-ChIP-data

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]MACS2020-01-07 18:14 1.8K 
[ ]MACS-region-stats2020-01-07 18:14 2.2K 
[ ]MACS2.files2020-01-04 08:45 1.5K 
[ ]RPM-RPKM-files.tar.gz2020-01-04 13:14 198M 
[ ]SAMstats-2020-01-03-191103L01-MS521-AB101.2x36mers.sacCer3.unique2020-01-07 13:48 155  
[ ]SAMstats-2020-01-03-191103L02-MS522-AB101.2x36mers.sacCer3.unique2020-01-07 13:48 155  
[ ]SAMstats-2020-01-03-191103L03-MS523-AB101.2x36mers.sacCer3.unique2020-01-07 13:49 155  
[ ]SAMstats-2020-01-03-191103L04-MS524-AB101.2x36mers.sacCer3.unique2020-01-07 13:50 155  
[ ]SAMstats-2020-01-03-191103L05-MS527-AB101.2x36mers.sacCer3.unique2020-01-07 13:49 155  
[ ]SAMstats-2020-01-03-191103L06-MS528-AB101.2x36mers.sacCer3.unique2020-01-07 13:48 155  
[ ]SAMstats-2020-01-03-191118L01-JK034-RAPA-AB101.2x36mers.sacCer3.unique2020-01-07 13:49 155  
[ ]SAMstats-2020-01-03-191118L02-JK035-RAPA-AB101.2x36mers.sacCer3.unique2020-01-07 13:49 155  
[ ]SAMstats-2020-01-03-191118L03-JK037-RAPA-AB101.2x36mers.sacCer3.unique2020-01-07 13:48 155  
[ ]SAMstats-2020-01-03-191118L04-JK039-RAPA-AB101.2x36mers.sacCer3.unique2020-01-07 13:49 155  
[ ]SAMstats-2020-01-03-191127L01-MK544-alpha-AB101.2x36mers.sacCer3.unique2020-01-07 13:42 154  
[ ]SAMstats-2020-01-03-191127L02-MK737-AB101.2x36mers.sacCer3.unique2020-01-07 13:49 155  
[ ]SAMstats-2020-01-03-191127L03-MK842-AB101.2x36mers.sacCer3.unique2020-01-07 13:45 155  
[ ]SAMstats-2020-01-03-191127L04-MK843-AB101.2x36mers.sacCer3.unique2020-01-07 13:43 154  
[ ]SAMstats-2020-01-03-191127L05-MK844-AB101.2x36mers.sacCer3.unique2020-01-07 13:44 155  
[ ]SAMstats-2020-01-03-191127L06-MK845-AB101.2x36mers.sacCer3.unique2020-01-07 13:45 155  
[ ]SAMstats-2020-01-03-191127L07-MK846-AB05-A_600.2x36mers.sacCer3.unique2020-01-07 13:42 154  
[ ]SAMstats-2020-01-03-191127L08-MK846-AB05-B_100.2x36mers.sacCer3.unique2020-01-07 13:41 154  
[ ]SAMstats-2020-01-03-191127L09-MK846-AB102-A_600.2x36mers.sacCer3.unique2020-01-07 13:40 154  
[ ]SAMstats-2020-01-03-191127L10-MK846-AB102-B_100.2x36mers.sacCer3.unique2020-01-07 13:41 154  
[ ]SAMstats.2x36mers.ERMTOC.table2020-01-04 11:36 12K 
[ ]SAMstats.2x36mers.table2020-01-04 11:36 11K 
[ ]SAMstats.files2020-01-04 09:06 71K 
[ ]SAMstats.nochrM.1x36mers.table2020-01-04 11:36 14K 
[ ]SAMstats.nochrM.table2020-01-04 11:36 14K 
[ ]SAMstats.table2020-01-04 11:36 47K 
[ ]SAMstats.tar.gz2020-01-04 11:37 18K 
[ ]TSS-250bp-350bp.Candida.RPKM.files2020-01-04 09:08 9.4K 
[ ]TSS-250bp-350bp.Candida.RPKM.table2020-01-04 13:12 3.2M 
[ ]TSS-250bp-350bp.Candida.RPM.files2020-01-04 09:08 9.3K 
[ ]TSS-250bp-350bp.Candida.RPM.table2020-01-04 13:12 3.2M 
[ ]TSS-250bp-350bp.sacCer3.RPKM.files2020-01-04 09:08 9.4K 
[ ]TSS-250bp-350bp.sacCer3.RPKM.table2020-01-04 13:12 5.1M 
[ ]TSS-250bp-350bp.sacCer3.RPM.files2020-01-04 09:09 9.3K 
[ ]TSS-250bp-350bp.sacCer3.RPM.table2020-01-04 13:12 5.1M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2020-01-04 09:09 9.1K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2020-01-04 13:13 3.2M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2020-01-04 09:09 9.1K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2020-01-04 13:13 3.2M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2020-01-04 09:09 9.1K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2020-01-04 13:13 5.2M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2020-01-04 09:09 9.1K 
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[ ]TSS-upstream500bp.Candida.RPKM.files2020-01-04 09:10 9.5K 
[ ]TSS-upstream500bp.Candida.RPKM.table2020-01-04 13:12 3.2M 
[ ]TSS-upstream500bp.Candida.RPM.files2020-01-04 09:11 9.4K 
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[ ]TSS-upstream500bp.sacCer3.RPKM.files2020-01-04 09:11 9.5K 
[ ]TSS-upstream500bp.sacCer3.RPKM.table2020-01-04 13:12 5.1M 
[ ]TSS-upstream500bp.sacCer3.RPM.files2020-01-04 09:11 9.4K 
[ ]TSS-upstream500bp.sacCer3.RPM.table2020-01-04 13:12 5.1M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2020-01-04 09:11 9.2K 
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[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2020-01-04 09:12 9.2K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2020-01-04 13:13 3.2M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2020-01-04 09:12 9.2K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2020-01-04 13:13 5.2M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2020-01-04 09:12 9.2K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2020-01-04 13:13 5.2M 
[TXT]bedRPKMfromBAM.sh2020-01-04 09:01 916K 
[ ]cumulativeGeneProfiles.Candida.500bp.smooth10.table2020-01-04 11:34 2.1M 
[ ]cumulativeGeneProfiles.Candida.500bp.table2020-01-04 11:35 2.1M 
[ ]cumulativeGeneProfiles.Candida.1000bp.smooth10.table2020-01-04 11:36 4.2M 
[ ]cumulativeGeneProfiles.Candida.1000bp.table2020-01-04 11:36 4.2M 
[ ]cumulativeGeneProfiles.Candida.files2020-01-04 09:02 7.3K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table2020-01-04 11:41 2.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table2020-01-04 11:41 2.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table2020-01-04 11:42 4.2M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table2020-01-04 11:40 4.2M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2020-01-04 11:38 2.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2020-01-04 11:37 2.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2020-01-04 11:36 4.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2020-01-04 11:36 4.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2020-01-04 11:36 2.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2020-01-04 11:38 2.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2020-01-04 11:37 4.2M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2020-01-04 11:37 4.2M 
[ ]cumulativeGeneProfiles.sacCer3.files2020-01-04 09:02 5.7K 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table2020-01-04 11:40 2.1M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table2020-01-04 11:40 2.1M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table2020-01-04 11:41 4.2M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table2020-01-04 11:39 4.2M 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table2020-01-04 11:33 688K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table2020-01-04 11:33 669K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table2020-01-04 11:35 1.5M 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table2020-01-04 11:33 1.4M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table2020-01-04 11:36 2.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table2020-01-04 11:38 2.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.smooth10.table2020-01-04 11:38 4.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table2020-01-04 11:36 4.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files2020-01-04 09:02 7.4K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.smooth10.table2020-01-04 11:43 2.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.table2020-01-04 11:43 2.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.smooth10.table2020-01-04 11:43 4.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.table2020-01-04 11:42 4.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2020-01-04 11:39 2.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2020-01-04 11:39 2.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2020-01-04 11:40 4.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2020-01-04 11:39 4.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2020-01-04 11:40 2.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2020-01-04 11:40 2.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2020-01-04 11:42 4.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2020-01-04 11:40 4.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files2020-01-04 09:02 5.8K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.smooth10.table2020-01-04 11:43 2.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.table2020-01-04 11:43 2.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.smooth10.table2020-01-04 11:44 4.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.table2020-01-04 11:42 4.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.smooth10.table2020-01-04 11:37 879K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.table2020-01-04 11:36 801K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.smooth10.table2020-01-04 11:38 1.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.table2020-01-04 11:36 1.5M 
[ ]datasets_stats.xls2020-01-04 11:41 393K 
[ ]genes.Candida.RPKM.files2020-01-04 09:02 8.8K 
[ ]genes.Candida.RPKM.table2020-01-04 13:10 3.4M 
[ ]genes.Candida.RPM.files2020-01-04 09:02 8.7K 
[ ]genes.Candida.RPM.table2020-01-04 13:10 3.4M 
[ ]genes.sacCer3.RPKM.files2020-01-04 09:03 8.8K 
[ ]genes.sacCer3.RPKM.table2020-01-04 13:10 5.1M 
[ ]genes.sacCer3.RPM.files2020-01-04 09:03 8.7K 
[ ]genes.sacCer3.RPM.table2020-01-04 13:10 5.1M 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2020-01-04 09:03 8.5K 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2020-01-04 13:12 3.4M 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2020-01-04 09:03 8.5K 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2020-01-04 13:12 3.4M 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2020-01-04 09:03 8.5K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2020-01-04 13:12 5.1M 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2020-01-04 09:04 8.5K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.protein_coding.table2020-01-04 13:27 4.8M 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.rRNA.RDN5.table2020-01-04 13:27 4.9K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.rRNA.RDN37.table2020-01-04 13:27 3.1K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.tRNA.table2020-01-04 13:27 222K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2020-01-04 13:12 5.1M 
[ ]genes_500bp_ext.Candida.RPKM.files2020-01-04 09:04 9.3K 
[ ]genes_500bp_ext.Candida.RPKM.table2020-01-04 13:12 3.5M 
[ ]genes_500bp_ext.Candida.RPM.files2020-01-04 09:04 9.2K 
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[ ]genes_500bp_ext.sacCer3.RPKM.files2020-01-04 09:04 9.3K 
[ ]genes_500bp_ext.sacCer3.RPKM.table2020-01-04 13:12 5.1M 
[ ]genes_500bp_ext.sacCer3.RPM.files2020-01-04 09:05 9.2K 
[ ]genes_500bp_ext.sacCer3.RPM.table2020-01-04 13:12 5.1M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2020-01-04 09:05 9.0K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2020-01-04 13:13 3.5M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2020-01-04 09:05 9.0K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2020-01-04 13:13 3.4M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2020-01-04 09:05 9.0K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2020-01-04 13:13 5.2M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2020-01-04 09:05 9.0K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2020-01-04 13:13 5.2M 
[TXT]map.sh2020-01-04 08:45 146K 
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[ ]signalAround-TSS.tar.gz2020-01-04 13:09 2.8M 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN5.files2020-01-04 09:07 7.6K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN5.table2020-01-04 13:09 713K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snRNA.files2020-01-04 09:07 7.4K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snRNA.table2020-01-04 13:09 712K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snoRNA.files2020-01-04 09:07 7.5K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snoRNA.table2020-01-04 13:09 711K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.tRNA.files2020-01-04 09:07 7.4K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.tRNA.table2020-01-04 13:09 717K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.rRNA.RDN5.files2020-01-04 09:07 7.5K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.rRNA.RDN5.table2020-01-04 13:09 422K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snRNA.files2020-01-04 09:08 7.3K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snRNA.table2020-01-04 13:09 712K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snoRNA.files2020-01-04 09:07 7.4K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snoRNA.table2020-01-04 13:09 712K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.files2020-01-04 09:08 7.3K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.table2020-01-04 13:09 716K 
[TXT]signalAroundCoordinate-BW.sh2020-01-04 09:06 152K 
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