Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2019-08-12-ChIP-data

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]2019-08-12-ChIP-data.pdf2019-08-13 14:46 614K 
[ ]2019-08-12-ChIP-data.pptx2019-08-13 14:46 294K 
[ ]MACS22019-08-13 14:07 540  
[ ]MACS2-region-stats2019-08-13 14:07 672  
[ ]MACS2.files2019-08-13 14:09 798  
[ ]MACS2.table2019-08-13 14:10 1.0K 
[ ]RPM-RPKM-files.tar.gz2019-08-31 18:09 284M 
[ ]SAMstats.2x36mers.ERMTOC.table2019-08-13 18:54 17K 
[ ]SAMstats.2x36mers.table2019-08-13 18:54 15K 
[ ]SAMstats.ChIP.files2019-08-13 14:06 881  
[ ]SAMstats.ChIP.table2019-08-13 14:06 744  
[ ]SAMstats.files2019-08-13 18:53 102K 
[ ]SAMstats.nochrM.1x36mers.table2019-08-13 18:54 19K 
[ ]SAMstats.nochrM.table2019-08-13 18:54 19K 
[ ]SAMstats.table2019-08-13 18:54 64K 
[ ]SAMstats.tar.gz2019-08-13 21:09 25K 
[DIR]SAMstats/2019-08-13 18:53 -  
[ ]TSS-250bp-350bp.Candida.RPKM.files2019-08-13 20:46 9.0K 
[ ]TSS-250bp-350bp.Candida.RPKM.table2019-08-31 18:06 5.2M 
[ ]TSS-250bp-350bp.Candida.RPM.files2019-08-13 20:46 8.9K 
[ ]TSS-250bp-350bp.Candida.RPM.table2019-08-31 18:06 5.2M 
[ ]TSS-250bp-350bp.sacCer3.RPKM.files2019-08-13 20:45 9.0K 
[ ]TSS-250bp-350bp.sacCer3.RPKM.table2019-08-31 18:06 6.9M 
[ ]TSS-250bp-350bp.sacCer3.RPM.files2019-08-13 20:44 8.9K 
[ ]TSS-250bp-350bp.sacCer3.RPM.table2019-08-31 18:07 6.9M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2019-08-13 20:45 8.6K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2019-08-31 18:06 5.3M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2019-08-13 20:45 8.6K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2019-08-31 18:06 5.3M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2019-08-13 20:44 8.6K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2019-08-31 18:06 7.0M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2019-08-13 20:44 8.6K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2019-08-31 18:06 7.0M 
[ ]TSS-upstream500bp.Candida.RPKM.files2019-08-13 20:45 9.1K 
[ ]TSS-upstream500bp.Candida.RPKM.table2019-08-31 18:06 5.2M 
[ ]TSS-upstream500bp.Candida.RPM.files2019-08-13 20:45 9.1K 
[ ]TSS-upstream500bp.Candida.RPM.table2019-08-31 18:06 5.2M 
[ ]TSS-upstream500bp.sacCer3.RPKM.files2019-08-13 20:44 9.1K 
[ ]TSS-upstream500bp.sacCer3.RPKM.table2019-08-31 18:07 7.0M 
[ ]TSS-upstream500bp.sacCer3.RPM.files2019-08-13 20:44 9.1K 
[ ]TSS-upstream500bp.sacCer3.RPM.table2019-08-31 18:07 7.0M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2019-08-13 20:45 8.8K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2019-08-31 18:06 5.2M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2019-08-13 20:45 8.7K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2019-08-31 18:06 5.2M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2019-08-13 20:43 8.8K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2019-08-31 18:06 7.0M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2019-08-13 20:43 8.7K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2019-08-31 18:06 7.0M 
[TXT]bedRPKMfromBAM-rerun.sh2019-08-30 02:30 681K 
[TXT]bedRPKMfromBAM.sh2019-08-13 20:41 1.1M 
[ ]cumulativeGeneProfiles.Candida.500bp.smooth10.table2019-08-14 04:35 2.9M 
[ ]cumulativeGeneProfiles.Candida.500bp.table2019-08-14 04:35 2.9M 
[ ]cumulativeGeneProfiles.Candida.1000bp.smooth10.table2019-08-14 04:38 5.8M 
[ ]cumulativeGeneProfiles.Candida.1000bp.table2019-08-14 04:35 5.7M 
[ ]cumulativeGeneProfiles.Candida.files2019-08-14 04:18 11K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table2019-08-13 20:31 2.9M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table2019-08-13 20:25 2.9M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table2019-08-13 20:39 5.8M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table2019-08-13 20:25 5.7M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2019-08-13 20:34 2.9M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2019-08-13 20:22 2.9M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2019-08-13 20:26 5.7M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2019-08-13 20:22 5.6M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2019-08-13 20:32 2.9M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2019-08-13 20:22 2.9M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2019-08-13 20:28 5.7M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2019-08-13 20:24 5.7M 
[ ]cumulativeGeneProfiles.sacCer3.files2019-08-13 19:59 7.8K 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table2019-08-13 20:29 2.9M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table2019-08-13 20:29 2.9M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table2019-08-13 20:28 5.7M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table2019-08-13 20:32 5.7M 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table2019-08-13 20:18 946K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table2019-08-13 20:17 921K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table2019-08-13 20:19 2.0M 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table2019-08-13 20:17 1.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table2019-08-13 20:50 2.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table2019-08-13 20:34 2.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.smooth10.table2019-08-13 20:38 5.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table2019-08-13 20:49 5.7M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files2019-08-13 20:01 10K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.smooth10.table2019-08-13 20:34 2.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.table2019-08-13 20:33 2.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.smooth10.table2019-08-13 20:48 5.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.table2019-08-13 20:45 5.7M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2019-08-13 20:30 2.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2019-08-13 20:25 2.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2019-08-13 20:49 5.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2019-08-13 20:26 5.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2019-08-13 20:31 2.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2019-08-13 20:40 2.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2019-08-13 20:32 5.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2019-08-13 20:27 5.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files2019-08-13 20:00 7.9K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.smooth10.table2019-08-13 20:46 2.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.table2019-08-13 20:34 2.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.smooth10.table2019-08-13 20:47 5.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.table2019-08-13 20:44 5.7M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.smooth10.table2019-08-13 20:24 1.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.table2019-08-13 20:23 1.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.smooth10.table2019-08-13 20:44 2.3M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.table2019-08-13 20:33 2.1M 
[ ]datasets_stats.xls2019-08-13 21:15 358K 
[ ]genes.Candida.RKPM.files2019-08-13 20:50 8.1K 
[ ]genes.Candida.RPKM.table2019-08-14 04:23 5.3M 
[ ]genes.Candida.RPM.files2019-08-13 20:49 8.1K 
[ ]genes.Candida.RPM.table2019-08-14 04:23 5.3M 
[ ]genes.sacCer3.RKPM.files2019-08-13 20:49 8.1K 
[ ]genes.sacCer3.RPKM.table2019-08-14 04:23 7.0M 
[ ]genes.sacCer3.RPM.files2019-08-13 20:48 8.1K 
[ ]genes.sacCer3.RPM.table2019-08-14 04:23 7.0M 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RKPM.files2019-08-13 20:49 7.8K 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2019-08-14 04:24 5.3M 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2019-08-13 20:49 7.7K 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2019-08-14 04:24 5.3M 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RKPM.files2019-08-13 20:46 7.8K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2019-08-14 04:24 7.0M 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2019-08-13 20:46 7.7K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.protein_coding.table2019-08-14 04:41 6.6M 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.rRNA.RDN5.table2019-08-14 04:41 6.8K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.rRNA.RDN37.table2019-08-14 04:41 4.5K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.tRNA.table2019-08-14 04:41 304K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2019-08-14 04:24 7.0M 
[ ]genes_500bp_ext.Candida.RKPM.files2019-08-13 20:50 8.8K 
[ ]genes_500bp_ext.Candida.RPKM.table2019-08-14 04:23 5.3M 
[ ]genes_500bp_ext.Candida.RPM.files2019-08-13 20:50 8.8K 
[ ]genes_500bp_ext.Candida.RPM.table2019-08-14 04:23 5.3M 
[ ]genes_500bp_ext.sacCer3.RKPM.files2019-08-13 20:49 8.8K 
[ ]genes_500bp_ext.sacCer3.RPKM.table2019-08-14 04:23 7.0M 
[ ]genes_500bp_ext.sacCer3.RPM.files2019-08-13 20:49 8.8K 
[ ]genes_500bp_ext.sacCer3.RPM.table2019-08-14 04:23 7.0M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RKPM.files2019-08-13 20:49 8.5K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2019-08-14 04:24 5.3M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2019-08-13 20:49 8.4K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2019-08-14 04:24 5.3M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RKPM.files2019-08-13 20:46 8.5K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2019-08-14 04:24 7.0M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2019-08-13 20:46 8.4K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2019-08-14 04:24 7.0M 
[TXT]map.sh2019-08-13 08:16 115K 
[ ]signalAround-TSS.tar.gz2019-08-13 20:32 4.0M 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN5.files2019-08-13 20:12 10K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN5.table2019-08-13 20:31 1.0M 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snRNA.files2019-08-13 20:12 10K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snRNA.table2019-08-13 20:31 1.0M 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snoRNA.files2019-08-13 20:12 10K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snoRNA.table2019-08-13 20:31 1.0M 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.tRNA.files2019-08-13 20:12 10K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.tRNA.table2019-08-13 20:31 1.0M 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.rRNA.RDN5.files2019-08-13 20:13 10K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.rRNA.RDN5.table2019-08-13 20:31 582K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snRNA.files2019-08-13 20:12 10K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snRNA.table2019-08-13 20:31 1.0M 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snoRNA.files2019-08-13 20:12 10K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snoRNA.table2019-08-13 20:31 1.0M 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.files2019-08-13 20:12 9.9K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.table2019-08-13 20:31 1.0M 
[TXT]signalAroundCoordinate-BW.sh2019-08-13 20:06 210K 
[TXT]wget.sh2019-08-13 03:05 88  
[ ]z2019-08-14 04:41 8.1K 
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