Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2019-06-03-ChIP-data

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]z2019-06-04 20:18 11K 
[TXT]signalAroundCoordinate-BW.sh2019-06-04 13:12 267K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.table2019-06-04 14:29 1.2M 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.files2019-06-04 13:13 13K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snoRNA.table2019-06-04 14:29 1.2M 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snoRNA.files2019-06-04 13:14 13K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snRNA.table2019-06-04 14:29 1.2M 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snRNA.files2019-06-04 13:13 13K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.rRNA.RDN5.table2019-06-04 14:29 731K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.rRNA.RDN5.files2019-06-04 13:14 13K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.tRNA.table2019-06-04 14:29 1.2M 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.tRNA.files2019-06-04 13:13 13K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snoRNA.table2019-06-04 14:29 1.2M 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snoRNA.files2019-06-04 13:14 13K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snRNA.table2019-06-04 14:29 1.2M 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snRNA.files2019-06-04 13:14 13K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN5.table2019-06-04 14:29 1.2M 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN5.files2019-06-04 13:14 14K 
[ ]signalAround-TSS.tar.gz2019-06-04 14:33 5.1M 
[TXT]map.sh2019-06-04 04:31 145K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2019-06-04 20:08 8.7M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2019-06-04 12:56 16K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2019-06-04 20:08 8.7M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RKPM.files2019-06-04 12:56 16K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2019-06-04 20:08 6.5M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2019-06-04 12:59 16K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2019-06-04 20:08 6.6M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RKPM.files2019-06-04 12:59 16K 
[ ]genes_500bp_ext.sacCer3.RPM.table2019-06-04 14:35 8.7M 
[ ]genes_500bp_ext.sacCer3.RPM.files2019-06-04 12:58 16K 
[ ]genes_500bp_ext.sacCer3.RPKM.table2019-06-04 14:35 8.7M 
[ ]genes_500bp_ext.sacCer3.RKPM.files2019-06-04 12:58 16K 
[ ]genes_500bp_ext.Candida.RPM.table2019-06-04 14:35 6.5M 
[ ]genes_500bp_ext.Candida.RPM.files2019-06-04 13:01 16K 
[ ]genes_500bp_ext.Candida.RPKM.table2019-06-04 14:35 6.5M 
[ ]genes_500bp_ext.Candida.RKPM.files2019-06-04 13:01 16K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2019-06-04 20:07 8.7M 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.tRNA.table2019-06-04 20:18 376K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.rRNA.RDN37.table2019-06-04 20:18 5.7K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.rRNA.RDN5.table2019-06-04 20:18 8.7K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.protein_coding.table2019-06-04 20:18 8.2M 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2019-06-04 12:55 15K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2019-06-04 20:07 8.7M 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RKPM.files2019-06-04 12:56 15K 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2019-06-04 20:07 6.5M 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2019-06-04 12:59 15K 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2019-06-04 20:07 6.5M 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RKPM.files2019-06-04 12:59 15K 
[ ]genes.sacCer3.RPM.table2019-06-04 14:35 8.6M 
[ ]genes.sacCer3.RPM.files2019-06-04 12:58 15K 
[ ]genes.sacCer3.RPKM.table2019-06-04 14:35 8.6M 
[ ]genes.sacCer3.RKPM.files2019-06-04 12:58 16K 
[ ]genes.Candida.RPM.table2019-06-04 14:35 6.5M 
[ ]genes.Candida.RPM.files2019-06-04 13:00 15K 
[ ]genes.Candida.RPKM.table2019-06-04 14:35 6.5M 
[ ]genes.Candida.RKPM.files2019-06-04 13:00 16K 
[ ]datasets_stats.xls2019-06-04 11:23 375K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.table2019-06-04 14:48 2.7M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.smooth10.table2019-06-04 14:51 2.9M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.table2019-06-04 14:47 1.4M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.smooth10.table2019-06-04 14:49 1.5M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.table2019-06-04 15:00 7.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.smooth10.table2019-06-04 15:04 7.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.table2019-06-04 15:02 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.smooth10.table2019-06-04 15:02 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files2019-06-04 13:04 10K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2019-06-04 14:53 7.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2019-06-04 15:01 7.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2019-06-04 14:56 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2019-06-04 14:57 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2019-06-04 14:54 7.0M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2019-06-04 14:58 7.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2019-06-04 14:55 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2019-06-04 14:56 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.table2019-06-04 15:01 7.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.smooth10.table2019-06-04 15:05 7.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.table2019-06-04 15:04 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.smooth10.table2019-06-04 15:04 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files2019-06-04 13:04 13K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table2019-06-04 14:58 7.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.smooth10.table2019-06-04 15:03 7.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table2019-06-04 14:58 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table2019-06-04 14:59 3.6M 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table2019-06-04 14:43 2.4M 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table2019-06-04 14:48 2.5M 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table2019-06-04 14:43 1.1M 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table2019-06-04 14:43 1.2M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table2019-06-04 14:53 7.1M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table2019-06-04 15:00 7.1M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table2019-06-04 14:54 3.6M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table2019-06-04 14:55 3.6M 
[ ]cumulativeGeneProfiles.sacCer3.files2019-06-04 13:04 10K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2019-06-04 14:50 7.2M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2019-06-04 14:55 7.2M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2019-06-04 14:51 3.6M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2019-06-04 14:53 3.6M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2019-06-04 14:49 7.0M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2019-06-04 14:53 7.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2019-06-04 14:50 3.6M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2019-06-04 14:52 3.6M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table2019-06-04 14:59 7.2M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table2019-06-04 15:00 7.2M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table2019-06-04 14:58 3.6M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table2019-06-04 14:57 3.6M 
[ ]cumulativeGeneProfiles.Candida.files2019-06-04 13:04 14K 
[ ]cumulativeGeneProfiles.Candida.1000bp.table2019-06-04 14:57 7.2M 
[ ]cumulativeGeneProfiles.Candida.1000bp.smooth10.table2019-06-04 14:56 7.2M 
[ ]cumulativeGeneProfiles.Candida.500bp.table2019-06-04 14:54 3.6M 
[ ]cumulativeGeneProfiles.Candida.500bp.smooth10.table2019-06-04 14:55 3.6M 
[TXT]bedRPKMfromBAM.sh2019-06-04 12:50 1.5M 
[TXT]bedRPKMfromBAM-rerun.sh2019-08-29 13:58 968K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2019-08-31 14:35 8.7M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2019-06-04 12:54 16K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2019-08-31 14:35 8.7M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2019-06-04 12:55 16K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2019-08-31 14:35 6.3M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2019-06-04 12:58 16K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2019-08-31 14:35 6.3M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2019-06-04 12:58 16K 
[ ]TSS-upstream500bp.sacCer3.RPM.table2019-08-31 14:34 8.6M 
[ ]TSS-upstream500bp.sacCer3.RPM.files2019-06-04 12:57 17K 
[ ]TSS-upstream500bp.sacCer3.RPKM.table2019-08-31 14:34 8.6M 
[ ]TSS-upstream500bp.sacCer3.RPKM.files2019-06-04 12:57 17K 
[ ]TSS-upstream500bp.Candida.RPM.table2019-08-31 14:34 6.3M 
[ ]TSS-upstream500bp.Candida.RPM.files2019-06-04 13:00 17K 
[ ]TSS-upstream500bp.Candida.RPKM.table2019-08-31 14:34 6.3M 
[ ]TSS-upstream500bp.Candida.RPKM.files2019-06-04 13:00 17K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2019-08-31 14:35 8.7M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2019-06-04 12:55 16K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2019-08-31 14:35 8.7M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2019-06-04 12:55 16K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2019-08-31 14:35 6.3M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2019-06-04 12:59 16K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2019-08-31 14:35 6.3M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2019-06-04 12:59 16K 
[ ]TSS-250bp-350bp.sacCer3.RPM.table2019-08-31 14:34 8.6M 
[ ]TSS-250bp-350bp.sacCer3.RPM.files2019-06-04 12:57 17K 
[ ]TSS-250bp-350bp.sacCer3.RPKM.table2019-08-31 14:34 8.6M 
[ ]TSS-250bp-350bp.sacCer3.RPKM.files2019-06-04 12:57 17K 
[ ]TSS-250bp-350bp.Candida.RPM.table2019-08-31 14:34 6.3M 
[ ]TSS-250bp-350bp.Candida.RPM.files2019-06-04 13:00 17K 
[ ]TSS-250bp-350bp.Candida.RPKM.table2019-08-31 14:34 6.3M 
[ ]TSS-250bp-350bp.Candida.RPKM.files2019-06-04 13:00 17K 
[DIR]SAMstats/2019-06-04 10:36 -  
[ ]SAMstats.table2019-06-04 10:37 83K 
[ ]SAMstats.nochrM.table2019-06-04 10:37 24K 
[ ]SAMstats.nochrM.1x36mers.table2019-06-04 10:39 24K 
[ ]SAMstats.files2019-06-04 10:36 132K 
[ ]SAMstats.2x36mers.table2019-06-04 10:40 19K 
[ ]SAMstats.2x36mers.ERMTOC.table2019-06-04 10:44 22K 
[ ]RPM-RPKM-files.tar.gz2019-08-31 14:39 362M 
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