module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Camptothecin_1.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Camptothecin_1.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Camptothecin_1.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Camptothecin_2.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Camptothecin_2.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Camptothecin_2.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Camptothecin_3.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Camptothecin_3.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Camptothecin_3.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Camptothecin_300.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Camptothecin_300.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Camptothecin_300.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Camptothecin_800.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Camptothecin_800.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Camptothecin_800.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=DMSO_1-1.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=DMSO_1-1.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=DMSO_1-1.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=DMSO_1-2.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=DMSO_1-2.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=DMSO_1-2.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=DMSO_2-1.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=DMSO_2-1.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=DMSO_2-1.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=DMSO_2-2.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=DMSO_2-2.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=DMSO_2-2.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Idarubicin_1.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Idarubicin_1.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Idarubicin_1.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Idarubicin_2.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Idarubicin_2.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Idarubicin_2.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Idarubicin_3.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Idarubicin_3.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Idarubicin_3.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Idarubicin_300.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Idarubicin_300.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Idarubicin_300.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Idarubicin_800.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Idarubicin_800.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Idarubicin_800.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Miconazole_1.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Miconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Miconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Miconazole_2.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Miconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Miconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Miconazole_3.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Miconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Miconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Miconazole_300.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Miconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Miconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Miconazole_800.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Miconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Miconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Unknown_1.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Unknown_1.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Unknown_1.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Unknown_2.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Unknown_2.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Unknown_2.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &
module load java; java -Xmx4G -jar ~/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=Unknown_3.2x36mers.sacCer3.unique.nochrM.bam OUTPUT=Unknown_3.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=Unknown_3.2x36mers.sacCer3.unique.nochrM.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true &