python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_1.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_1.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_2.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_2.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_3.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_3.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_300.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_300.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_800.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_800.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_1.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_1.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_2.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_2.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_3.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_3.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_300.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_300.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_800.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_800.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_1-1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-1.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_1-1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-1.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_1-2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-2.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_1-2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-2.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_2-1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-1.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_2-1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-1.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_2-2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-2.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_2-2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-2.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_1.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_1.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_2.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_2.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_3.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_3.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_300.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_300.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_800.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_800.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_1.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_1.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_2.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_2.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_3.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_3.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_300.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_300.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_800.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_800.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_1.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_1.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_2.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_2.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_3.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_3.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_300.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_300.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_800.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_800.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_1.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_1.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_2.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_2.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_3.2x36mers.sacCer3.unique.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_3.2x36mers.sacCer3.unique.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Camptothecin_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_1.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Camptothecin_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_2.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Camptothecin_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_3.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Camptothecin_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_300.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Camptothecin_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_800.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Clotrimazole_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_1.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Clotrimazole_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_2.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Clotrimazole_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_3.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Clotrimazole_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_300.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Clotrimazole_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_800.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- DMSO_1-1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-1.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- DMSO_1-2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-2.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- DMSO_2-1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-1.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- DMSO_2-2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-2.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Idarubicin_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_1.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Idarubicin_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_2.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Idarubicin_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_3.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Idarubicin_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_300.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Idarubicin_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_800.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ketoconazole_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_1.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ketoconazole_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_2.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ketoconazole_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_3.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ketoconazole_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_300.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ketoconazole_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_800.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Miconazole_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_1.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Miconazole_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_2.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Miconazole_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_3.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Miconazole_300.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_300.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Miconazole_800.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_800.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Unknown_1.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_1.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Unknown_2.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_2.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Unknown_3.2x36mers.sacCer3.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_3.2x36mers.sacCer3.unique.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_1.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_1.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_2.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_2.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_3.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_3.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_300.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_300.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_800.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Camptothecin_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_800.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_1-1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-1.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_1-1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-1.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_1-2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-2.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_1-2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-2.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_2-1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-1.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_2-1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-1.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_2-2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-2.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DMSO_2-2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-2.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_1.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_1.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_2.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_2.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_3.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_3.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_300.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_300.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_800.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Idarubicin_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_800.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Miconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_1.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_1.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_2.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_2.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_3.2x36mers.sacCer3.unique.nochrM.dedup.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Unknown_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_3.2x36mers.sacCer3.unique.nochrM.dedup.fragment.wig -notitle -RPM -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Camptothecin_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_1.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Camptothecin_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_2.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Camptothecin_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_3.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Camptothecin_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_300.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Camptothecin_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Camptothecin_800.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- DMSO_1-1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-1.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- DMSO_1-2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_1-2.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- DMSO_2-1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-1.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- DMSO_2-2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes DMSO_2-2.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Idarubicin_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_1.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Idarubicin_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_2.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Idarubicin_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_3.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Idarubicin_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_300.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Idarubicin_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Idarubicin_800.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Miconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Miconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Miconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Miconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Miconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Miconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Unknown_1.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_1.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Unknown_2.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_2.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Unknown_3.2x36mers.sacCer3.unique.nochrM.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes Unknown_3.2x36mers.sacCer3.unique.nochrM.dedup.5p.wig -notitle -RPM -shift 4