python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_1.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Camptothecin_1.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_1.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Camptothecin_1.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_1.2x36mers.sacCer3.unique.bam SAMstats-Camptothecin_1.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_2.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Camptothecin_2.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_2.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Camptothecin_2.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_2.2x36mers.sacCer3.unique.bam SAMstats-Camptothecin_2.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_3.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Camptothecin_3.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_3.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Camptothecin_3.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_3.2x36mers.sacCer3.unique.bam SAMstats-Camptothecin_3.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_300.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Camptothecin_300.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_300.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Camptothecin_300.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_300.2x36mers.sacCer3.unique.bam SAMstats-Camptothecin_300.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_800.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Camptothecin_800.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_800.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Camptothecin_800.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Camptothecin_800.2x36mers.sacCer3.unique.bam SAMstats-Camptothecin_800.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Clotrimazole_1.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Clotrimazole_1.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_1.2x36mers.sacCer3.unique.bam SAMstats-Clotrimazole_1.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Clotrimazole_2.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Clotrimazole_2.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_2.2x36mers.sacCer3.unique.bam SAMstats-Clotrimazole_2.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Clotrimazole_3.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Clotrimazole_3.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_3.2x36mers.sacCer3.unique.bam SAMstats-Clotrimazole_3.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Clotrimazole_300.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Clotrimazole_300.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_300.2x36mers.sacCer3.unique.bam SAMstats-Clotrimazole_300.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Clotrimazole_800.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Clotrimazole_800.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Clotrimazole_800.2x36mers.sacCer3.unique.bam SAMstats-Clotrimazole_800.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_1-1.2x36mers.sacCer3.unique.nochrM.bam SAMstats-DMSO_1-1.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_1-1.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-DMSO_1-1.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_1-1.2x36mers.sacCer3.unique.bam SAMstats-DMSO_1-1.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_1-2.2x36mers.sacCer3.unique.nochrM.bam SAMstats-DMSO_1-2.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_1-2.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-DMSO_1-2.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_1-2.2x36mers.sacCer3.unique.bam SAMstats-DMSO_1-2.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_2-1.2x36mers.sacCer3.unique.nochrM.bam SAMstats-DMSO_2-1.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_2-1.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-DMSO_2-1.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_2-1.2x36mers.sacCer3.unique.bam SAMstats-DMSO_2-1.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_2-2.2x36mers.sacCer3.unique.nochrM.bam SAMstats-DMSO_2-2.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_2-2.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-DMSO_2-2.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py DMSO_2-2.2x36mers.sacCer3.unique.bam SAMstats-DMSO_2-2.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_1.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Idarubicin_1.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_1.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Idarubicin_1.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_1.2x36mers.sacCer3.unique.bam SAMstats-Idarubicin_1.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_2.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Idarubicin_2.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_2.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Idarubicin_2.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_2.2x36mers.sacCer3.unique.bam SAMstats-Idarubicin_2.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_3.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Idarubicin_3.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_3.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Idarubicin_3.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_3.2x36mers.sacCer3.unique.bam SAMstats-Idarubicin_3.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_300.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Idarubicin_300.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_300.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Idarubicin_300.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_300.2x36mers.sacCer3.unique.bam SAMstats-Idarubicin_300.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_800.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Idarubicin_800.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_800.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Idarubicin_800.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Idarubicin_800.2x36mers.sacCer3.unique.bam SAMstats-Idarubicin_800.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Ketoconazole_1.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Ketoconazole_1.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_1.2x36mers.sacCer3.unique.bam SAMstats-Ketoconazole_1.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Ketoconazole_2.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Ketoconazole_2.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_2.2x36mers.sacCer3.unique.bam SAMstats-Ketoconazole_2.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Ketoconazole_3.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Ketoconazole_3.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_3.2x36mers.sacCer3.unique.bam SAMstats-Ketoconazole_3.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Ketoconazole_300.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Ketoconazole_300.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_300.2x36mers.sacCer3.unique.bam SAMstats-Ketoconazole_300.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Ketoconazole_800.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Ketoconazole_800.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ketoconazole_800.2x36mers.sacCer3.unique.bam SAMstats-Ketoconazole_800.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_1.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Miconazole_1.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_1.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Miconazole_1.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_1.2x36mers.sacCer3.unique.bam SAMstats-Miconazole_1.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_2.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Miconazole_2.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_2.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Miconazole_2.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_2.2x36mers.sacCer3.unique.bam SAMstats-Miconazole_2.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_3.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Miconazole_3.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_3.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Miconazole_3.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_3.2x36mers.sacCer3.unique.bam SAMstats-Miconazole_3.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_300.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Miconazole_300.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_300.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Miconazole_300.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_300.2x36mers.sacCer3.unique.bam SAMstats-Miconazole_300.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_800.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Miconazole_800.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_800.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Miconazole_800.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Miconazole_800.2x36mers.sacCer3.unique.bam SAMstats-Miconazole_800.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Unknown_1.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Unknown_1.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Unknown_1.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Unknown_1.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Unknown_1.2x36mers.sacCer3.unique.bam SAMstats-Unknown_1.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Unknown_2.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Unknown_2.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Unknown_2.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Unknown_2.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Unknown_2.2x36mers.sacCer3.unique.bam SAMstats-Unknown_2.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Unknown_3.2x36mers.sacCer3.unique.nochrM.bam SAMstats-Unknown_3.2x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Unknown_3.2x36mers.sacCer3.unique.nochrM.dedup.bam SAMstats-Unknown_3.2x36mers.sacCer3.unique.nochrM.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Unknown_3.2x36mers.sacCer3.unique.bam SAMstats-Unknown_3.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired