python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.end1.plus.RPM.wig -notitle -RPM -stranded + -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.end1.minus.RPM.wig -notitle -RPM -stranded - -uniqueBAM -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.RPM.wig -notitle -RPM -uniqueBAM