python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d00.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d00.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d05.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d05.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d10.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d10.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d15.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d15.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d20.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d20.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d25.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d25.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d30.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d30.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d35.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d35.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d40.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d40.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d45.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d45.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d50.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d50.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d55.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d55.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-merge-d60.2x36mers.hg19-male.sorted.bam SAMstats-ATAC-merge-d60.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-D1-Day1-FrozKera-R3-A.2x36mers.hg19-male.bam SAMstats-ATAC-D1-Day1-FrozKera-R3-A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-D1-Day3-5-FrozKera-R3-A.2x36mers.hg19-male.bam SAMstats-ATAC-D1-Day3-5-FrozKera-R3-A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-D1-Day3-FrozKera-R3-A.2x36mers.hg19-male.bam SAMstats-ATAC-D1-Day3-FrozKera-R3-A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-D1-Day4-FrozKera-R3-A.2x36mers.hg19-male.bam SAMstats-ATAC-D1-Day4-FrozKera-R3-A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-D1-Day5-5-FrozKera-R3-A.2x36mers.hg19-male.bam SAMstats-ATAC-D1-Day5-5-FrozKera-R3-A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-D1-Day5-FrozKera-R3-B.2x36mers.hg19-male.bam SAMstats-ATAC-D1-Day5-FrozKera-R3-B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-D1-Day6-FrozKera-R3-A.2x36mers.hg19-male.bam SAMstats-ATAC-D1-Day6-FrozKera-R3-A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-D2-Day4-FrozKera-R3-B.2x36mers.hg19-male.bam SAMstats-ATAC-D2-Day4-FrozKera-R3-B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day00-D2-FrozenKera-1A.2x36mers.hg19-male.bam SAMstats-ATAC-Day00-D2-FrozenKera-1A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day0-5-D1-FrozenKera-2D.2x36mers.hg19-male.bam SAMstats-ATAC-Day0-5-D1-FrozenKera-2D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day0-5-D2-FrozenKera-20-2D.2x36mers.hg19-male.bam SAMstats-ATAC-Day0-5-D2-FrozenKera-20-2D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day05-D2-FrozenKera-2A.2x36mers.hg19-male.bam SAMstats-ATAC-Day05-D2-FrozenKera-2A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day0-D1-FrozenKera-F-1D.2x36mers.hg19-male.bam SAMstats-ATAC-Day0-D1-FrozenKera-F-1D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day0-D2-FrozenKera-1D.2x36mers.hg19-male.bam SAMstats-ATAC-Day0-D2-FrozenKera-1D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day10-D2-FrozenKera-3A.2x36mers.hg19-male.bam SAMstats-ATAC-Day10-D2-FrozenKera-3A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day1-5-D1-FrozenKera-4D.2x36mers.hg19-male.bam SAMstats-ATAC-Day1-5-D1-FrozenKera-4D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day15-D2-FrozenKera-4A.2x36mers.hg19-male.bam SAMstats-ATAC-Day15-D2-FrozenKera-4A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day1-5-D2-FrozenKera-F-4D.2x36mers.hg19-male.bam SAMstats-ATAC-Day1-5-D2-FrozenKera-F-4D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day1-D1-FrozenKera-20-3E.2x36mers.hg19-male.bam SAMstats-ATAC-Day1-D1-FrozenKera-20-3E -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day1-D2-FrozenKera-3D.2x36mers.hg19-male.bam SAMstats-ATAC-Day1-D2-FrozenKera-3D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day20-D1-FrozenKera-5C.2x36mers.hg19-male.bam SAMstats-ATAC-Day20-D1-FrozenKera-5C -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day20-D2-FrozenKera-5A.2x36mers.hg19-male.bam SAMstats-ATAC-Day20-D2-FrozenKera-5A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day25-D1-FrozenKera-6A.2x36mers.hg19-male.bam SAMstats-ATAC-Day25-D1-FrozenKera-6A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day2-5-D1-FrozenKera-6D.2x36mers.hg19-male.bam SAMstats-ATAC-Day2-5-D1-FrozenKera-6D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day25-D2-FrozenKera-6A.2x36mers.hg19-male.bam SAMstats-ATAC-Day25-D2-FrozenKera-6A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day2-5-D2-FrozenKera-F-6D.2x36mers.hg19-male.bam SAMstats-ATAC-Day2-5-D2-FrozenKera-F-6D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day2-D1-FrozenKera-70-5D.2x36mers.hg19-male.bam SAMstats-ATAC-Day2-D1-FrozenKera-70-5D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day2-D2-FrozenKera-5D.2x36mers.hg19-male.bam SAMstats-ATAC-Day2-D2-FrozenKera-5D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day30-D2-FrozenKera-7A.2x36mers.hg19-male.bam SAMstats-ATAC-Day30-D2-FrozenKera-7A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day3-5-D1-FrozenKera-8D.2x36mers.hg19-male.bam SAMstats-ATAC-Day3-5-D1-FrozenKera-8D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day3-5-D2-FrozenKera-45-8D.2x36mers.hg19-male.bam SAMstats-ATAC-Day3-5-D2-FrozenKera-45-8D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day35-D2-FrozenKera-8A.2x36mers.hg19-male.bam SAMstats-ATAC-Day35-D2-FrozenKera-8A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day3-D1-FrozenKera-25-7D.2x36mers.hg19-male.bam SAMstats-ATAC-Day3-D1-FrozenKera-25-7D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day3-D2-FrozenKera-7D.2x36mers.hg19-male.bam SAMstats-ATAC-Day3-D2-FrozenKera-7D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day40-D2-FrozenKera-9A.2x36mers.hg19-male.bam SAMstats-ATAC-Day40-D2-FrozenKera-9A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day45-D1-FrozenKera-10C.2x36mers.hg19-male.bam SAMstats-ATAC-Day45-D1-FrozenKera-10C -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day4-5-D1-FrozenKera-10D.2x36mers.hg19-male.bam SAMstats-ATAC-Day4-5-D1-FrozenKera-10D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day45-D2-FrozenKera-10A.2x36mers.hg19-male.bam SAMstats-ATAC-Day45-D2-FrozenKera-10A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day4-5-D2-FrozenKera-F-10D.2x36mers.hg19-male.bam SAMstats-ATAC-Day4-5-D2-FrozenKera-F-10D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day4-D1-FrozenKera-35-9D.2x36mers.hg19-male.bam SAMstats-ATAC-Day4-D1-FrozenKera-35-9D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day4-D2-FrozenKera-9D.2x36mers.hg19-male.bam SAMstats-ATAC-Day4-D2-FrozenKera-9D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day50-D2-FrozenKera-11A.2x36mers.hg19-male.bam SAMstats-ATAC-Day50-D2-FrozenKera-11A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day55and60-D2_R1and3.2x36mers.hg19-male.bam SAMstats-ATAC-Day55and60-D2_R1and3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day5-5-D1-FrozenKera-12D.2x36mers.hg19-male.bam SAMstats-ATAC-Day5-5-D1-FrozenKera-12D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day55-D2-FrozenKera-12A.2x36mers.hg19-male.bam SAMstats-ATAC-Day55-D2-FrozenKera-12A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day5-5-D2-FrozenKera-25-12D.2x36mers.hg19-male.bam SAMstats-ATAC-Day5-5-D2-FrozenKera-25-12D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day5-D1-FrozenKera-F-11D.2x36mers.hg19-male.bam SAMstats-ATAC-Day5-D1-FrozenKera-F-11D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day5-D2-FrozenKera-11D.2x36mers.hg19-male.bam SAMstats-ATAC-Day5-D2-FrozenKera-11D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day60-D1-FrozenKera-13C.2x36mers.hg19-male.bam SAMstats-ATAC-Day60-D1-FrozenKera-13C -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day60-D2-FrozenKera-13A.2x36mers.hg19-male.bam SAMstats-ATAC-Day60-D2-FrozenKera-13A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day6-D1-FrozenKera-40-13D.2x36mers.hg19-male.bam SAMstats-ATAC-Day6-D1-FrozenKera-40-13D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ATAC-Day6-D2-FrozenKera-13D.2x36mers.hg19-male.bam SAMstats-ATAC-Day6-D2-FrozenKera-13D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_CTCF.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_H3K27ac.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_H3K27me3.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_H3K4me1.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d0.GGR.ChIP-seq_input_H3K4me1_CTCF.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_CTCF.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_H3K27ac.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_H3K27me3.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_H3K4me1.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d3.GGR.ChIP-seq_input_H3K4me1_CTCF.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_CTCF.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_H3K27ac.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_H3K27me3.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_H3K4me1.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K27ac_H3K27me3.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b1.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b2.2x36mers.hg19-male.bam SAMstats-primary_keratinocyte-d6.GGR.ChIP-seq_input_H3K4me1_CTCF.b2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired