python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d00.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d00.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d00.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d00.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d05.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d05.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d05.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d05.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d10.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d10.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d10.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d10.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d15.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d15.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d15.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d15.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d20.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d20.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d20.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d20.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d25.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d25.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d25.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d25.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d30.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d30.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d30.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d30.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d35.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d35.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d35.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d35.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d40.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d40.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d40.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d40.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d45.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d45.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d45.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d45.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d50.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d50.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d50.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d50.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d55.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d55.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d55.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d55.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d60.PAS-seq.b1.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d60.b1.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/PAS-seq-clusters-reannotation-V2/PAS-seq-reannotation-primary_keratinocyte-d60.PAS-seq.b2.snglt1.40bp.10bp.dedup.no_misprimes.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.PAS-seq-reannotation-d60.b2.40bp.10bp.dedup.no_misprimes.min5 -sortby 6 -window 10 -antiSense
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d00.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d00.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d00.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d00.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d00.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d00.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d00.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d00.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d05.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d05.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d05.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d05.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d05.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d05.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d05.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d05.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d10.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d10.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d10.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d10.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d10.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d10.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d10.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d10.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d15.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d15.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d15.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d15.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d15.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d15.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d15.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d15.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d20.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d20.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d20.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d20.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d20.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d20.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d20.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d20.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d25.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d25.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d25.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d25.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d25.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d25.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d25.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d25.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d30.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d30.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d30.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d30.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d30.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d30.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d30.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d30.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d35.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d35.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d35.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d35.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d35.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d35.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d35.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d35.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d40.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d40.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d40.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d40.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d40.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d40.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d40.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d40.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d45.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d45.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d45.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d45.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d45.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d45.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d45.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d45.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d50.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d50.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d50.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d50.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d50.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d50.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d50.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d50.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d55.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d55.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d55.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d55.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d55.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d55.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d55.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d55.b2.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d60.RAMPAGE.b1.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d60.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d60.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d60.b1.dedup.min5 -sortby 6 -window 10
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-individual-stranded.py /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/RAMPAGE-clusters-reannotation-V2/RAMPAGE-reannotation-primary_keratinocyte-d60.RAMPAGE.b2.snglt1.dedup.min5.bz2 0 4 3 500 500 /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d60.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig.gz /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d60.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig.gz signalAroundCoordinate-individual-stranded.RAMPAGE-reannotation-d60.b2.dedup.min5 -sortby 6 -window 10