samtools index primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d00.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d00.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d05.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d05.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d10.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d10.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d15.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d15.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d20.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d20.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d25.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d25.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d30.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d30.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d35.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d35.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d40.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d40.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d45.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d45.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d50.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d50.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d55.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d55.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d60.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d60.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam &
samtools index primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam &