python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_polyA.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_polyA.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d0.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d0.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d3.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d3.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d6.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d6.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle 
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle