python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.wig -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.unique.wig -nomulti -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.plus.wig -fragments first-read-strand -stranded + -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.minus.wig -fragments first-read-strand -stranded - -RPM -notitle
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &