python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM & 
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM & 
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.b1.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.b2.RAMPAGE/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.end1.5p.plus.wig -end1only -stranded + -notitle -RPM &