/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools view primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam | python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py - 0 - | wc -l >  primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.toTranscriptome.out.number_mapped_reads