/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d0.RNA-seq_polyA.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d0.RNA-seq_polyA.b1/RSEM-from-STAR
/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d0.RNA-seq_polyA.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d0.RNA-seq_polyA.b2/RSEM-from-STAR
/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d3.RNA-seq_polyA.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d3.RNA-seq_polyA.b1/RSEM-from-STAR
/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d3.RNA-seq_polyA.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d3.RNA-seq_polyA.b2/RSEM-from-STAR
/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d6.RNA-seq_polyA.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d6.RNA-seq_polyA.b1/RSEM-from-STAR
/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d6.RNA-seq_polyA.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d6.RNA-seq_polyA.b2/RSEM-from-STAR
/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d0.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d0.RNA-seq_ribozero.b1/RSEM-from-STAR
/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d0.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d0.RNA-seq_ribozero.b2/RSEM-from-STAR
/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d3.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d3.RNA-seq_ribozero.b1/RSEM-from-STAR
/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d3.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d3.RNA-seq_ribozero.b2/RSEM-from-STAR
/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d6.RNA-seq_ribozero.b1/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d6.RNA-seq_ribozero.b1/RSEM-from-STAR
/users/marinovg/programs/RSEM-1.3.0/rsem-calculate-expression --alignments --paired-end -p 12 primary_keratinocyte-d6.RNA-seq_ribozero.b2/STAR-2.5.3aAligned.toTranscriptome.out.bam /users/marinovg/genomes/hg19/gencode/gencode_v19/RSEM  primary_keratinocyte-d6.RNA-seq_ribozero.b2/RSEM-from-STAR
