Index of /kundaje/marinovg/oak/Promoters/2025-07-21-training/Gallus_gallus

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[PARENTDIR]Parent Directory  -  
[   ]Adipose-counts_deepshap_scores.bigWig2025-08-05 06:16 195M 
[   ]Adipose-counts_deepshap_scores.npy2025-08-05 06:15 513M 
[   ]Adipose-counts_deepshap_scores_onehot.npy2025-08-05 06:15 513M 
[   ]Adipose-counts_modisco_results.hdf52025-08-05 17:31 107M 
[DIR]Adipose-counts_modisco_results/2025-08-25 22:16 -  
[   ]Adipose-profile_deepshap_scores.bigWig2025-08-05 06:14 196M 
[   ]Adipose-profile_deepshap_scores.npy2025-08-05 06:12 513M 
[   ]Adipose-profile_deepshap_scores_onehot.npy2025-08-05 06:12 513M 
[   ]Adipose-profile_modisco_results.hdf52025-08-05 08:28 56M 
[DIR]Adipose-profile_modisco_results/2025-08-25 22:16 -  
[TXT]Adipose-standalone_1_train_no_background_DHSs.py2025-08-02 05:14 37K 
[TXT]Adipose-standalone_2_interpret.py2025-08-02 04:59 20K 
[TXT]Adipose-standalone_3_run_modisco-counts.py2025-08-02 05:00 8.0K 
[TXT]Adipose-standalone_3_run_modisco-profile.py2025-08-02 05:00 8.0K 
[   ]Adipose.model2025-08-02 06:06 25M 
[TXT]Adipose_metrics.tsv2025-08-02 06:21 32K 
[   ]BrainCortex-counts_deepshap_scores.bigWig2025-08-03 16:36 239M 
[   ]BrainCortex-counts_deepshap_scores.npy2025-08-03 16:34 692M 
[   ]BrainCortex-counts_deepshap_scores_onehot.npy2025-08-03 16:35 692M 
[   ]BrainCortex-counts_modisco_results.hdf52025-08-07 19:37 170M 
[DIR]BrainCortex-counts_modisco_results/2025-08-25 22:16 -  
[   ]BrainCortex-profile_deepshap_scores.bigWig2025-08-03 16:34 240M 
[   ]BrainCortex-profile_deepshap_scores.npy2025-08-03 16:33 692M 
[   ]BrainCortex-profile_deepshap_scores_onehot.npy2025-08-03 16:33 692M 
[   ]BrainCortex-profile_modisco_results.hdf52025-08-05 11:55 72M 
[DIR]BrainCortex-profile_modisco_results/2025-08-25 22:16 -  
[TXT]BrainCortex-standalone_1_train_no_background_DHSs.py2025-08-02 05:37 37K 
[TXT]BrainCortex-standalone_2_interpret.py2025-08-03 08:29 20K 
[TXT]BrainCortex-standalone_3_run_modisco-counts.py2025-08-05 02:54 8.0K 
[TXT]BrainCortex-standalone_3_run_modisco-profile.py2025-08-05 02:54 8.0K 
[   ]BrainCortex.model2025-08-02 09:47 25M 
[TXT]BrainCortex_metrics.tsv2025-08-02 10:11 52K 
[   ]Cecum-counts_deepshap_scores.bigWig2025-08-03 21:59 206M 
[   ]Cecum-counts_deepshap_scores.npy2025-08-03 21:58 556M 
[   ]Cecum-counts_deepshap_scores_onehot.npy2025-08-03 21:58 556M 
[   ]Cecum-counts_modisco_results.hdf52025-08-05 14:02 101M 
[DIR]Cecum-counts_modisco_results/2025-08-25 22:19 -  
[   ]Cecum-profile_deepshap_scores.bigWig2025-08-03 21:58 208M 
[   ]Cecum-profile_deepshap_scores.npy2025-08-03 21:56 556M 
[   ]Cecum-profile_deepshap_scores_onehot.npy2025-08-03 21:56 556M 
[   ]Cecum-profile_modisco_results.hdf52025-08-05 09:35 65M 
[DIR]Cecum-profile_modisco_results/2025-08-25 22:18 -  
[TXT]Cecum-standalone_1_train_no_background_DHSs.py2025-08-02 11:43 37K 
[TXT]Cecum-standalone_2_interpret.py2025-08-03 08:48 20K 
[TXT]Cecum-standalone_3_run_modisco-counts.py2025-08-05 02:54 8.0K 
[TXT]Cecum-standalone_3_run_modisco-profile.py2025-08-05 02:54 8.0K 
[   ]Cecum.model2025-08-03 02:16 25M 
[TXT]Cecum_metrics.tsv2025-08-03 02:52 40K 
[   ]Cerebellum-counts_deepshap_scores.bigWig2025-08-04 00:34 213M 
[   ]Cerebellum-counts_deepshap_scores.npy2025-08-04 00:32 578M 
[   ]Cerebellum-counts_deepshap_scores_onehot.npy2025-08-04 00:32 578M 
[   ]Cerebellum-counts_modisco_results.hdf52025-08-07 10:05 120M 
[DIR]Cerebellum-counts_modisco_results/2025-08-25 22:18 -  
[   ]Cerebellum-profile_deepshap_scores.bigWig2025-08-04 00:32 213M 
[   ]Cerebellum-profile_deepshap_scores.npy2025-08-04 00:31 578M 
[   ]Cerebellum-profile_deepshap_scores_onehot.npy2025-08-04 00:31 578M 
[   ]Cerebellum-profile_modisco_results.hdf52025-08-05 11:44 63M 
[DIR]Cerebellum-profile_modisco_results/2025-08-25 22:18 -  
[TXT]Cerebellum-standalone_1_train_no_background_DHSs.py2025-08-02 05:37 37K 
[TXT]Cerebellum-standalone_2_interpret.py2025-08-03 08:48 20K 
[TXT]Cerebellum-standalone_3_run_modisco-counts.py2025-08-05 02:54 8.0K 
[TXT]Cerebellum-standalone_3_run_modisco-profile.py2025-08-05 02:54 8.0K 
[   ]Cerebellum.model2025-08-02 08:43 25M 
[TXT]Cerebellum_metrics.tsv2025-08-02 09:19 32K 
[   ]Colon-counts_deepshap_scores.bigWig2025-08-04 00:29 213M 
[   ]Colon-counts_deepshap_scores.npy2025-08-04 00:28 565M 
[   ]Colon-counts_deepshap_scores_onehot.npy2025-08-04 00:28 565M 
[   ]Colon-counts_modisco_results.hdf52025-08-06 12:11 136M 
[DIR]Colon-counts_modisco_results/2025-08-25 22:18 -  
[   ]Colon-profile_deepshap_scores.bigWig2025-08-04 00:28 213M 
[   ]Colon-profile_deepshap_scores.npy2025-08-04 00:26 565M 
[   ]Colon-profile_deepshap_scores_onehot.npy2025-08-04 00:26 565M 
[   ]Colon-profile_modisco_results.hdf52025-08-05 20:42 58M 
[DIR]Colon-profile_modisco_results/2025-08-25 22:18 -  
[TXT]Colon-standalone_1_train_no_background_DHSs.py2025-08-02 08:13 37K 
[TXT]Colon-standalone_2_interpret.py2025-08-03 08:30 20K 
[TXT]Colon-standalone_3_run_modisco-counts.py2025-08-05 02:55 8.0K 
[TXT]Colon-standalone_3_run_modisco-profile.py2025-08-05 02:55 8.0K 
[   ]Colon.model2025-08-02 10:00 25M 
[TXT]Colon_metrics.tsv2025-08-02 10:18 58K 
[   ]Duodenum-counts_deepshap_scores.bigWig2025-08-04 03:35 192M 
[   ]Duodenum-counts_deepshap_scores.npy2025-08-04 03:33 509M 
[   ]Duodenum-counts_deepshap_scores_onehot.npy2025-08-04 03:33 509M 
[   ]Duodenum-counts_modisco_results.hdf52025-08-06 12:17 115M 
[DIR]Duodenum-counts_modisco_results/2025-08-25 22:18 -  
[   ]Duodenum-profile_deepshap_scores.bigWig2025-08-04 03:33 193M 
[   ]Duodenum-profile_deepshap_scores.npy2025-08-04 03:31 509M 
[   ]Duodenum-profile_deepshap_scores_onehot.npy2025-08-04 03:31 509M 
[   ]Duodenum-profile_modisco_results.hdf52025-08-05 16:15 59M 
[DIR]Duodenum-profile_modisco_results/2025-08-25 22:18 -  
[TXT]Duodenum-standalone_1_train_no_background_DHSs.py2025-08-02 05:37 37K 
[TXT]Duodenum-standalone_2_interpret.py2025-08-03 08:30 20K 
[TXT]Duodenum-standalone_3_run_modisco-counts.py2025-08-05 02:55 8.0K 
[TXT]Duodenum-standalone_3_run_modisco-profile.py2025-08-05 02:55 8.0K 
[   ]Duodenum.model2025-08-02 13:03 25M 
[TXT]Duodenum_metrics.tsv2025-08-02 13:19 46K 
[   ]Esophagus-counts_deepshap_scores.bigWig2025-08-04 02:49 170M 
[   ]Esophagus-counts_deepshap_scores.npy2025-08-04 02:47 445M 
[   ]Esophagus-counts_deepshap_scores_onehot.npy2025-08-04 02:47 445M 
[   ]Esophagus-counts_modisco_results.hdf52025-08-06 13:07 113M 
[DIR]Esophagus-counts_modisco_results/2025-08-25 22:18 -  
[   ]Esophagus-profile_deepshap_scores.bigWig2025-08-04 02:47 171M 
[   ]Esophagus-profile_deepshap_scores.npy2025-08-04 02:45 445M 
[   ]Esophagus-profile_deepshap_scores_onehot.npy2025-08-04 02:45 445M 
[   ]Esophagus-profile_modisco_results.hdf52025-08-05 16:41 55M 
[DIR]Esophagus-profile_modisco_results/2025-08-25 22:19 -  
[TXT]Esophagus-standalone_1_train_no_background_DHSs.py2025-08-02 11:56 37K 
[TXT]Esophagus-standalone_2_interpret.py2025-08-03 21:26 20K 
[TXT]Esophagus-standalone_3_run_modisco-counts.py2025-08-05 02:55 8.0K 
[TXT]Esophagus-standalone_3_run_modisco-profile.py2025-08-05 02:55 8.0K 
[   ]Esophagus.model2025-08-02 13:05 25M 
[TXT]Esophagus_metrics.tsv2025-08-02 13:50 18K 
[   ]Gallus_gallus.GRCg6a.dna.toplevel.100mers.unique.rescaled_0_to_1.bigWig2025-08-02 04:41 121M 
[   ]Gizzard-counts_deepshap_scores.bigWig2025-08-04 02:16 152M 
[   ]Gizzard-counts_deepshap_scores.npy2025-08-04 02:15 399M 
[   ]Gizzard-counts_deepshap_scores_onehot.npy2025-08-04 02:15 399M 
[   ]Gizzard-counts_modisco_results.hdf52025-08-06 03:42 99M 
[DIR]Gizzard-counts_modisco_results/2025-08-25 22:20 -  
[   ]Gizzard-profile_deepshap_scores.bigWig2025-08-04 02:14 153M 
[   ]Gizzard-profile_deepshap_scores.npy2025-08-04 02:13 399M 
[   ]Gizzard-profile_deepshap_scores_onehot.npy2025-08-04 02:13 399M 
[   ]Gizzard-profile_modisco_results.hdf52025-08-05 16:04 44M 
[DIR]Gizzard-profile_modisco_results/2025-08-25 22:19 -  
[TXT]Gizzard-standalone_1_train_no_background_DHSs.py2025-08-02 23:07 37K 
[TXT]Gizzard-standalone_2_interpret.py2025-08-03 21:26 20K 
[TXT]Gizzard-standalone_3_run_modisco-counts.py2025-08-05 02:55 8.0K 
[TXT]Gizzard-standalone_3_run_modisco-profile.py2025-08-05 02:55 8.0K 
[   ]Gizzard.model2025-08-03 09:49 25M 
[TXT]Gizzard_metrics.tsv2025-08-03 10:25 46K 
[   ]Heart-counts_deepshap_scores.bigWig2025-08-04 03:18 181M 
[   ]Heart-counts_deepshap_scores.npy2025-08-04 03:16 486M 
[   ]Heart-counts_deepshap_scores_onehot.npy2025-08-04 03:17 486M 
[   ]Heart-counts_modisco_results.hdf52025-08-06 08:48 104M 
[DIR]Heart-counts_modisco_results/2025-08-25 22:19 -  
[   ]Heart-profile_deepshap_scores.bigWig2025-08-04 03:16 182M 
[   ]Heart-profile_deepshap_scores.npy2025-08-04 03:14 486M 
[   ]Heart-profile_deepshap_scores_onehot.npy2025-08-04 03:14 486M 
[   ]Heart-profile_modisco_results.hdf52025-08-05 22:09 54M 
[DIR]Heart-profile_modisco_results/2025-08-25 22:19 -  
[TXT]Heart-standalone_1_train_no_background_DHSs.py2025-08-02 23:07 37K 
[TXT]Heart-standalone_2_interpret.py2025-08-03 21:27 20K 
[TXT]Heart-standalone_3_run_modisco-counts.py2025-08-05 02:55 8.0K 
[TXT]Heart-standalone_3_run_modisco-profile.py2025-08-05 02:55 8.0K 
[   ]Heart.model2025-08-03 01:37 25M 
[TXT]Heart_metrics.tsv2025-08-03 08:08 21K 
[   ]Hypothalamus-counts_deepshap_scores.bigWig2025-08-05 10:38 246M 
[   ]Hypothalamus-counts_deepshap_scores.npy2025-08-05 10:36 681M 
[   ]Hypothalamus-counts_deepshap_scores_onehot.npy2025-08-05 10:37 681M 
[   ]Hypothalamus-counts_modisco_results.hdf52025-08-20 00:44 117M 
[DIR]Hypothalamus-counts_modisco_results/2025-08-25 22:22 -  
[   ]Hypothalamus-profile_deepshap_scores.bigWig2025-08-05 10:36 247M 
[   ]Hypothalamus-profile_deepshap_scores.npy2025-08-05 10:34 681M 
[   ]Hypothalamus-profile_deepshap_scores_onehot.npy2025-08-05 10:35 681M 
[   ]Hypothalamus-profile_modisco_results.hdf52025-08-18 23:27 74M 
[DIR]Hypothalamus-profile_modisco_results/2025-08-25 22:22 -  
[TXT]Hypothalamus-standalone_1_train_no_background_DHSs.py2025-08-02 23:07 37K 
[TXT]Hypothalamus-standalone_2_interpret.py2025-08-05 06:55 20K 
[TXT]Hypothalamus-standalone_3_run_modisco-counts.py2025-08-05 02:55 8.0K 
[TXT]Hypothalamus-standalone_3_run_modisco-profile.py2025-08-05 02:55 8.0K 
[   ]Hypothalamus.model2025-08-03 13:36 25M 
[TXT]Hypothalamus_metrics.tsv2025-08-03 14:52 66K 
[   ]Ileum-counts_deepshap_scores.bigWig2025-08-04 04:15 224M 
[   ]Ileum-counts_deepshap_scores.npy2025-08-04 04:14 617M 
[   ]Ileum-counts_deepshap_scores_onehot.npy2025-08-04 04:14 617M 
[   ]Ileum-counts_modisco_results.hdf52025-08-07 13:05 153M 
[DIR]Ileum-counts_modisco_results/2025-08-25 22:21 -  
[   ]Ileum-profile_deepshap_scores.bigWig2025-08-04 04:14 225M 
[   ]Ileum-profile_deepshap_scores.npy2025-08-04 04:12 617M 
[   ]Ileum-profile_deepshap_scores_onehot.npy2025-08-04 04:12 617M 
[   ]Ileum-profile_modisco_results.hdf52025-08-05 23:44 66M 
[DIR]Ileum-profile_modisco_results/2025-08-25 22:22 -  
[TXT]Ileum-standalone_1_train_no_background_DHSs.py2025-08-02 23:09 37K 
[TXT]Ileum-standalone_2_interpret.py2025-08-03 08:30 20K 
[TXT]Ileum-standalone_3_run_modisco-counts.py2025-08-05 02:55 8.0K 
[TXT]Ileum-standalone_3_run_modisco-profile.py2025-08-05 02:55 8.0K 
[   ]Ileum.model2025-08-03 00:35 25M 
[TXT]Ileum_metrics.tsv2025-08-03 00:55 46K 
[   ]Jejunum-counts_deepshap_scores.bigWig2025-08-04 03:59 209M 
[   ]Jejunum-counts_deepshap_scores.npy2025-08-04 03:58 566M 
[   ]Jejunum-counts_deepshap_scores_onehot.npy2025-08-04 03:58 566M 
[   ]Jejunum-counts_modisco_results.hdf52025-08-06 12:30 123M 
[DIR]Jejunum-counts_modisco_results/2025-08-25 22:31 -  
[   ]Jejunum-profile_deepshap_scores.bigWig2025-08-04 03:58 210M 
[   ]Jejunum-profile_deepshap_scores.npy2025-08-04 03:57 566M 
[   ]Jejunum-profile_deepshap_scores_onehot.npy2025-08-04 03:57 566M 
[   ]Jejunum-profile_modisco_results.hdf52025-08-05 22:16 63M 
[DIR]Jejunum-profile_modisco_results/2025-08-25 22:33 -  
[TXT]Jejunum-standalone_1_train_no_background_DHSs.py2025-08-02 05:38 37K 
[TXT]Jejunum-standalone_2_interpret.py2025-08-04 00:56 20K 
[TXT]Jejunum-standalone_3_run_modisco-counts.py2025-08-05 02:55 8.0K 
[TXT]Jejunum-standalone_3_run_modisco-profile.py2025-08-05 02:55 8.0K 
[   ]Jejunum.model2025-08-03 00:44 25M 
[TXT]Jejunum_metrics.tsv2025-08-03 01:03 52K 
[   ]Kidney-counts_deepshap_scores.bigWig2025-08-04 09:01 185M 
[   ]Kidney-counts_deepshap_scores.npy2025-08-04 08:59 488M 
[   ]Kidney-counts_deepshap_scores_onehot.npy2025-08-04 08:59 488M 
[   ]Kidney-counts_modisco_results.hdf52025-08-07 01:54 164M 
[DIR]Kidney-counts_modisco_results/2025-08-25 22:33 -  
[   ]Kidney-profile_deepshap_scores.bigWig2025-08-04 08:59 186M 
[   ]Kidney-profile_deepshap_scores.npy2025-08-04 08:57 488M 
[   ]Kidney-profile_deepshap_scores_onehot.npy2025-08-04 08:57 488M 
[   ]Kidney-profile_modisco_results.hdf52025-08-05 21:42 65M 
[DIR]Kidney-profile_modisco_results/2025-08-25 22:33 -  
[TXT]Kidney-standalone_1_train_no_background_DHSs.py2025-08-02 05:38 37K 
[TXT]Kidney-standalone_2_interpret.py2025-08-04 03:07 20K 
[TXT]Kidney-standalone_3_run_modisco-counts.py2025-08-05 02:56 8.0K 
[TXT]Kidney-standalone_3_run_modisco-profile.py2025-08-05 02:56 8.0K 
[   ]Kidney.model2025-08-03 06:34 24M 
[TXT]Kidney_metrics.tsv2025-08-03 08:58 18K 
[   ]Liver-counts_deepshap_scores.bigWig2025-08-04 08:46 175M 
[   ]Liver-counts_deepshap_scores.npy2025-08-04 08:44 467M 
[   ]Liver-counts_deepshap_scores_onehot.npy2025-08-04 08:44 467M 
[   ]Liver-counts_modisco_results.hdf52025-08-06 11:19 104M 
[DIR]Liver-counts_modisco_results/2025-08-25 22:29 -  
[   ]Liver-profile_deepshap_scores.bigWig2025-08-04 08:44 177M 
[   ]Liver-profile_deepshap_scores.npy2025-08-04 08:42 467M 
[   ]Liver-profile_deepshap_scores_onehot.npy2025-08-04 08:42 467M 
[   ]Liver-profile_modisco_results.hdf52025-08-05 21:27 59M 
[DIR]Liver-profile_modisco_results/2025-08-25 22:29 -  
[TXT]Liver-standalone_1_train_no_background_DHSs.py2025-08-02 05:38 37K 
[TXT]Liver-standalone_2_interpret.py2025-08-04 03:07 20K 
[TXT]Liver-standalone_3_run_modisco-counts.py2025-08-05 02:56 8.0K 
[TXT]Liver-standalone_3_run_modisco-profile.py2025-08-05 02:56 8.0K 
[   ]Liver.model2025-08-03 02:37 25M 
[TXT]Liver_metrics.tsv2025-08-03 02:51 23K 
[TXT]Logomaker.sh2025-08-25 22:14 530K 
[   ]Lung-counts_deepshap_scores.bigWig2025-08-04 13:09 268M 
[   ]Lung-counts_deepshap_scores.npy2025-08-04 13:06 783M 
[   ]Lung-counts_deepshap_scores_onehot.npy2025-08-04 13:06 783M 
[   ]Lung-counts_modisco_results.hdf52025-08-08 08:49 146M 
[DIR]Lung-counts_modisco_results/2025-08-25 22:27 -  
[   ]Lung-profile_deepshap_scores.bigWig2025-08-04 13:06 269M 
[   ]Lung-profile_deepshap_scores.npy2025-08-04 13:03 783M 
[   ]Lung-profile_deepshap_scores_onehot.npy2025-08-04 13:03 783M 
[   ]Lung-profile_modisco_results.hdf52025-08-05 14:33 84M 
[DIR]Lung-profile_modisco_results/2025-08-25 22:27 -  
[TXT]Lung-standalone_1_train_no_background_DHSs.py2025-08-03 02:06 37K 
[TXT]Lung-standalone_2_interpret.py2025-08-03 08:30 20K 
[TXT]Lung-standalone_3_run_modisco-counts.py2025-08-05 02:56 8.0K 
[TXT]Lung-standalone_3_run_modisco-profile.py2025-08-05 02:56 8.0K 
[   ]Lung.model2025-08-03 03:31 25M 
[TXT]Lung_metrics.tsv2025-08-03 04:03 44K 
[TXT]Muscle-standalone_1_train_no_background_DHSs.py2025-08-02 05:38 37K 
[TXT]Muscle-standalone_2_interpret.py2025-08-03 08:30 20K 
[TXT]Muscle-standalone_3_run_modisco-counts.py2025-08-05 02:56 8.0K 
[TXT]Muscle-standalone_3_run_modisco-profile.py2025-08-05 02:56 8.0K 
[TXT]Ovary-standalone_1_train_no_background_DHSs.py2025-08-02 05:38 37K 
[TXT]Ovary-standalone_2_interpret.py2025-08-04 03:43 20K 
[TXT]Ovary-standalone_3_run_modisco-counts.py2025-08-05 02:56 8.0K 
[TXT]Ovary-standalone_3_run_modisco-profile.py2025-08-05 02:56 8.0K 
[   ]Spleen-counts_deepshap_scores.bigWig2025-08-04 10:38 210M 
[   ]Spleen-counts_deepshap_scores.npy2025-08-04 10:36 551M 
[   ]Spleen-counts_deepshap_scores_onehot.npy2025-08-04 10:36 551M 
[   ]Spleen-counts_modisco_results.hdf52025-08-05 16:29 128M 
[DIR]Spleen-counts_modisco_results/2025-08-25 22:24 -  
[   ]Spleen-profile_deepshap_scores.bigWig2025-08-04 10:36 210M 
[   ]Spleen-profile_deepshap_scores.npy2025-08-04 10:33 551M 
[   ]Spleen-profile_deepshap_scores_onehot.npy2025-08-04 10:33 551M 
[   ]Spleen-profile_modisco_results.hdf52025-08-05 10:06 61M 
[DIR]Spleen-profile_modisco_results/2025-08-25 22:33 -  
[TXT]Spleen-standalone_1_train_no_background_DHSs.py2025-08-02 05:38 37K 
[TXT]Spleen-standalone_2_interpret.py2025-08-04 03:59 20K 
[TXT]Spleen-standalone_3_run_modisco-counts.py2025-08-05 02:56 8.0K 
[TXT]Spleen-standalone_3_run_modisco-profile.py2025-08-05 02:56 8.0K 
[   ]Spleen.model2025-08-03 04:36 25M 
[TXT]Spleen_metrics.tsv2025-08-03 04:53 53K 
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