#!/bin/bash

set -e

script_dir=`dirname $0`

cell_types=( "K562" "A673" "CACO2" "CALU3" "MCF10A" "HUVEC" )

for cell_type in "${cell_types[@]}"; do
  echo "Processing data for ${cell_type}."

  "$script_dir/1.0_process_bams.sh" "$cell_type"

  "$script_dir/1.1_make_pseudoreps.sh" "$cell_type"

  "$script_dir/1.2_process_peaks.sh" "$cell_type"

  "$script_dir/1.3_process_dnase_peaks.sh" "$cell_type"
done