python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Cryptococcus_neoformans/Cryptococcus_neoformans.GCA_000091045.1.20.fixed.gtf TSS_tur1delta_30E_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TSS_tur1delta_30E_merged.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Cryptococcus_neoformans/Cryptococcus_neoformans.GCA_000091045.1.20.fixed.gtf TSS_tur1delta_30E_rep_1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TSS_tur1delta_30E_rep_1.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Cryptococcus_neoformans/Cryptococcus_neoformans.GCA_000091045.1.20.fixed.gtf TSS_tur1delta_30E_rep_2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TSS_tur1delta_30E_rep_2.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Cryptococcus_neoformans/Cryptococcus_neoformans.GCA_000091045.1.20.fixed.gtf TSS_tur1delta_30E_rep_3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TSS_tur1delta_30E_rep_3.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Cryptococcus_neoformans/Cryptococcus_neoformans.GCA_000091045.1.20.fixed.gtf TSS_tur1delta_30S_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TSS_tur1delta_30S_merged.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Cryptococcus_neoformans/Cryptococcus_neoformans.GCA_000091045.1.20.fixed.gtf TSS_tur1delta_30S_rep_1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TSS_tur1delta_30S_rep_1.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Cryptococcus_neoformans/Cryptococcus_neoformans.GCA_000091045.1.20.fixed.gtf TSS_tur1delta_30S_rep_2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TSS_tur1delta_30S_rep_2.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Cryptococcus_neoformans/Cryptococcus_neoformans.GCA_000091045.1.20.fixed.gtf TSS_tur1delta_30S_rep_3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TSS_tur1delta_30S_rep_3.unique.5p -normalize -singlemodelgenes