python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_ananassae/Drosophila_ananassae.dana_caf1.20.chrom.sizes Dana_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only