~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig