python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_01 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_02 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_03 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_04 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_05 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_06 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_07 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_08 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_09 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_10 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_11 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_12 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_13 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_14 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_15 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_16 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_17 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_18 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_19 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_20 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_21 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_22 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dsim_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dsim_merged -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_simulans/Drosophila_simulans.WUGSC1.20.chrom.sizes samtools -paired