python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_01 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_02 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_03 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_04 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_05 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_06 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_07 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_08 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_09 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_10 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_11 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_12 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_13 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_14 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_15 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_16 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_17 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_18 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_19 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_20 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_21 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_22 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_23 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_24-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_24 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_25-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_25 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_26-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_26 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_27-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_27 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_28-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_28 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_29-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_29 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dpse_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dpse_merged -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_pseudoobscura/Drosophila_pseudoobscura.HGSC2.20.chrom.sizes samtools -paired