python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.chrom.sizes Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only