python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_01.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_02.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_03.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_04.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_05.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_06.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_07.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_08.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_09.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_10.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_11.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_12.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_13.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_14.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_15.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_16.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_17.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_18.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_19.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_20.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_21.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_22.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_23.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Drosophila_erecta/Drosophila_erecta.dere_caf1.20.gtf Dere_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Dere_merged.unique.5p -normalize -singlemodelgenes