python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_01-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_01 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_02-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_02 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_03-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_03 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_04-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_04 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_05-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_05 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_06-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_06 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_07-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_07 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_08-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_08 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_09-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_09 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_10-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_10 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_11-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_11 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_12-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_12 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_13-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_13 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_14-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_14 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_15-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_15 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_16-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_16 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_17-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_17 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_18-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_18 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_19-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_19 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_20-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_20 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_21-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_21 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_22-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_22 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_23-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_23 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel2_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Dmel2_merged -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes  samtools -paired