python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel01_E01h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel01_E01h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel02_E02h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel02_E02h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel03_E03h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel03_E03h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel04_E04h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel04_E04h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel05_E05h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel05_E05h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel06_E06h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel06_E06h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel07_E07h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel07_E07h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel08_E08h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel08_E08h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel09_E09h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel09_E09h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel10_E10h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel10_E10h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel11_E11h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel11_E11h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel12_E12h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel12_E12h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel13_E13h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel13_E13h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel14_E14h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel14_E14h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel15_E15h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel15_E15h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel16_E16h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel16_E16h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel17_E17h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel17_E17h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel18_E18h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel18_E18h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel19_E19h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel19_E19h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel20_E20h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel20_E20h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel21_E21h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel21_E21h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel22_E22h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel22_E22h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel23_E23h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel23_E23h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel24_E24h-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel24_E24h -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel25_L1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel25_L1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel26_L2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel26_L2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel27_L3_DG-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel27_L3_DG -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel28_L3_LG-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel28_L3_LG -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel29_L3_CG-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel29_L3_CG -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel30_WPP+1d-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel30_WPP+1d -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel31_WPP+2d-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel31_WPP+2d -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel32_WPP+3d-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel32_WPP+3d -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel33_WPP+4d-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel33_WPP+4d -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel34_WPP+5d-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel34_WPP+5d -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel35_AdM5d-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel35_AdM5d -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel36_AdF5d-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel36_AdF5d -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Dmel_merged-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-Dmel_merged -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes samtools -paired