python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Adult-female-WTSSseq-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Adult-female-WTSSseq-pooled -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Amphibians/xenTro10/xenTro10.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Adult-femalepool-CAGEseq-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Adult-femalepool-CAGEseq -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Amphibians/xenTro10/xenTro10.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Adult-male-WTSSseq-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Adult-male-WTSSseq-pooled -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Amphibians/xenTro10/xenTro10.chrom.sizes  samtools -paired