samtools index Total_RNA_0hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index Total_RNA_12hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index Total_RNA_18hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index Total_RNA_24hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index Total_RNA_30hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index Total_RNA_36hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index Total_RNA_42hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index Total_RNA_48hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index Total_RNA_6hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam