python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.fixed.gtf Total_RNA_0hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Total_RNA_0hpf.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.fixed.gtf Total_RNA_12hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Total_RNA_12hpf.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.fixed.gtf Total_RNA_18hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Total_RNA_18hpf.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.fixed.gtf Total_RNA_24hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Total_RNA_24hpf.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.fixed.gtf Total_RNA_30hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Total_RNA_30hpf.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.fixed.gtf Total_RNA_36hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Total_RNA_36hpf.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.fixed.gtf Total_RNA_42hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Total_RNA_42hpf.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.fixed.gtf Total_RNA_48hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Total_RNA_48hpf.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.fixed.gtf Total_RNA_6hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Total_RNA_6hpf.unique.5p -normalize -singlemodelgenes