python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Total_RNA_0hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Total_RNA_0hpf -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Total_RNA_12hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Total_RNA_12hpf -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Total_RNA_18hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Total_RNA_18hpf -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Total_RNA_24hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Total_RNA_24hpf -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Total_RNA_30hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Total_RNA_30hpf -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Total_RNA_36hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Total_RNA_36hpf -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Total_RNA_42hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Total_RNA_42hpf -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Total_RNA_48hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Total_RNA_48hpf -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Total_RNA_6hpf-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Total_RNA_6hpf -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus-Spur_5.0/Strongylocentrotus_purpuratus-Spur_5.0.chrom.sizes  samtools -paired