~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes S_cerevisiae_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig