python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py S_pombe_WT_PROcap-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-S_pombe_WT_PROcap -bam /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.20.chrom.sizes  samtools -paired