python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/RAMPAGE-clusters-V2.py TURTI-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Chelicerata/Tetranychus_urticae/Tetranychus_urticae.GCA_000239435.1.20.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Chelicerata/Tetranychus_urticae/Tetranychus_urticae.GCA_000239435.1.20.gtf 200 200 100 TURTI-1-STAR-2.5.3a.RAMPAGE-clusters-V2.bed &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/RAMPAGE-clusters-V2.py TURTI-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Chelicerata/Tetranychus_urticae/Tetranychus_urticae.GCA_000239435.1.20.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Chelicerata/Tetranychus_urticae/Tetranychus_urticae.GCA_000239435.1.20.gtf 200 200 100 TURTI-2-STAR-2.5.3a.RAMPAGE-clusters-V2.bed &