python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/RAMPAGE-clusters-V2.py AAEGY-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Aedes_aegypti/Aedes_aegypti.AaegL1.20.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Aedes_aegypti/Aedes_aegypti.AaegL1.20.gtf 200 200 100 AAEGY-1-STAR-2.5.3a.RAMPAGE-clusters-V2.bed
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/RAMPAGE-clusters-V2.py AAEGY-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Aedes_aegypti/Aedes_aegypti.AaegL1.20.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Aedes_aegypti/Aedes_aegypti.AaegL1.20.gtf 200 200 100 AAEGY-2-STAR-2.5.3a.RAMPAGE-clusters-V2.bed