python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig -stranded - -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig -stranded - -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig -stranded - -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig -stranded - -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig -stranded + -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig -stranded + -RPM -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig -stranded + -RPM -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig -stranded + -nomulti -notitle -end1only