python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Antenna-rep1-SRR11929153.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Brain-rep1-SRR11929152.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Fatbody-rep1-SRR11929147.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Labipalp-rep1-SRR11929146.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Labipalp-rep2-SRR11929145.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Ovary-rep1-SRR11929144.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Pronotum-rep1-SRR11929143.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Pronotum-rep2-SRR11929142.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Testis-rep1-SRR11929141.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Testis-rep2-SRR11929140.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Thoracic_muscle-rep1-SRR11929151.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Thoracic_muscle-rep2-SRR11929150.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Wing-rep1-SRR11929149.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/Gallus_gallus.GRCg6a.102.gtf Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-Wing-rep2-SRR11929148.unique.5p -normalize -singlemodelgenes