python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Antenna-rep1-SRR11929153-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Antenna-rep1-SRR11929153 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Brain-rep1-SRR11929152-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Brain-rep1-SRR11929152 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Fatbody-rep1-SRR11929147-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Fatbody-rep1-SRR11929147 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Labipalp-rep1-SRR11929146-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Labipalp-rep1-SRR11929146 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Labipalp-rep2-SRR11929145-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Labipalp-rep2-SRR11929145 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ovary-rep1-SRR11929144-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Ovary-rep1-SRR11929144 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Pronotum-rep1-SRR11929143-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Pronotum-rep1-SRR11929143 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Pronotum-rep2-SRR11929142-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Pronotum-rep2-SRR11929142 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Testis-rep1-SRR11929141-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Testis-rep1-SRR11929141 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Testis-rep2-SRR11929140-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Testis-rep2-SRR11929140 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Thoracic_muscle-rep1-SRR11929151-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Thoracic_muscle-rep1-SRR11929151 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Thoracic_muscle-rep2-SRR11929150-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Thoracic_muscle-rep2-SRR11929150 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Wing-rep1-SRR11929149-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Wing-rep1-SRR11929149 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Wing-rep2-SRR11929148-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Wing-rep2-SRR11929148 -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Locusta_migratoria-LocustGenomeV1/GCA_000516895.1_LocustGenomeV1_genomic.chrom.sizes  samtools -paired