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~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.chrom.sizes PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
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