samtools index CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam
samtools index TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam