python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CA1_10F-CAGE-GSM2323923-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CA1_10F-CAGE-GSM2323923.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CA1_10M-CAGE-GSM2323924-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CA1_10M-CAGE-GSM2323924.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CA1_1F-CAGE-GSM2323919-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CA1_1F-CAGE-GSM2323919.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CA1_1M-CAGE-GSM2323920-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CA1_1M-CAGE-GSM2323920.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CA1_20F-CAGE-GSM2323925-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CA1_20F-CAGE-GSM2323925.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CA1_20M-CAGE-GSM2323926-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CA1_20M-CAGE-GSM2323926.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CA1_4F-CAGE-GSM2323921-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CA1_4F-CAGE-GSM2323921.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CA1_4M-CAGE-GSM2323922-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CA1_4M-CAGE-GSM2323922.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CB_10F-CAGE-GSM2323939-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CB_10F-CAGE-GSM2323939.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CB_10M-CAGE-GSM2323940-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CB_10M-CAGE-GSM2323940.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CB_1F-CAGE-GSM2323935-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CB_1F-CAGE-GSM2323935.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CB_1M-CAGE-GSM2323936-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CB_1M-CAGE-GSM2323936.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CB_20F-CAGE-GSM2323941-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CB_20F-CAGE-GSM2323941.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CB_20M-CAGE-GSM2323942-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CB_20M-CAGE-GSM2323942.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CB_4F-CAGE-GSM2323937-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CB_4F-CAGE-GSM2323937.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf CB_4M-CAGE-GSM2323938-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-CB_4M-CAGE-GSM2323938.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf DG_10F-CAGE-GSM2323931-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-DG_10F-CAGE-GSM2323931.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf DG_10M-CAGE-GSM2323932-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-DG_10M-CAGE-GSM2323932.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf DG_1F-CAGE-GSM2323927-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-DG_1F-CAGE-GSM2323927.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf DG_1M-CAGE-GSM2323928-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-DG_1M-CAGE-GSM2323928.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf DG_20F-CAGE-GSM2323933-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-DG_20F-CAGE-GSM2323933.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf DG_20M-CAGE-GSM2323934-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-DG_20M-CAGE-GSM2323934.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf DG_4F-CAGE-GSM2323929-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-DG_4F-CAGE-GSM2323929.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf DG_4M-CAGE-GSM2323930-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-DG_4M-CAGE-GSM2323930.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf OC_10F-CAGE-GSM2323947-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-OC_10F-CAGE-GSM2323947.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf OC_10M-CAGE-GSM2323948-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-OC_10M-CAGE-GSM2323948.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf OC_1F-CAGE-GSM2323943-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-OC_1F-CAGE-GSM2323943.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf OC_1M-CAGE-GSM2323944-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-OC_1M-CAGE-GSM2323944.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf OC_20F-CAGE-GSM2323949-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-OC_20F-CAGE-GSM2323949.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf OC_20M-CAGE-GSM2323950-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-OC_20M-CAGE-GSM2323950.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf OC_4F-CAGE-GSM2323945-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-OC_4F-CAGE-GSM2323945.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf OC_4M-CAGE-GSM2323946-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-OC_4M-CAGE-GSM2323946.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PCC_10F-CAGE-GSM2323899-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PCC_10F-CAGE-GSM2323899.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PCC_10M-CAGE-GSM2323900-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PCC_10M-CAGE-GSM2323900.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PCC_1F-CAGE-GSM2323895-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PCC_1F-CAGE-GSM2323895.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PCC_1M-CAGE-GSM2323896-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PCC_1M-CAGE-GSM2323896.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PCC_20F-CAGE-GSM2323901-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PCC_20F-CAGE-GSM2323901.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PCC_20M-CAGE-GSM2323902-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PCC_20M-CAGE-GSM2323902.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PCC_4F-CAGE-GSM2323897-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PCC_4F-CAGE-GSM2323897.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PCC_4M-CAGE-GSM2323898-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PCC_4M-CAGE-GSM2323898.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PC_10F-CAGE-GSM2323915-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PC_10F-CAGE-GSM2323915.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PC_10M-CAGE-GSM2323916-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PC_10M-CAGE-GSM2323916.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PC_1F-CAGE-GSM2323911-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PC_1F-CAGE-GSM2323911.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PC_1M-CAGE-GSM2323912-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PC_1M-CAGE-GSM2323912.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PC_20F-CAGE-GSM2323917-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PC_20F-CAGE-GSM2323917.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PC_20M-CAGE-GSM2323918-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PC_20M-CAGE-GSM2323918.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PC_4F-CAGE-GSM2323913-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PC_4F-CAGE-GSM2323913.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PC_4M-CAGE-GSM2323914-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PC_4M-CAGE-GSM2323914.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PFC_10F-CAGE-GSM2323891-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PFC_10F-CAGE-GSM2323891.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PFC_10M-CAGE-GSM2323892-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PFC_10M-CAGE-GSM2323892.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PFC_1F-CAGE-GSM2323887-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PFC_1F-CAGE-GSM2323887.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PFC_1M-CAGE-GSM2323888-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PFC_1M-CAGE-GSM2323888.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PFC_20F-CAGE-GSM2323893-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PFC_20F-CAGE-GSM2323893.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PFC_20M-CAGE-GSM2323894-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PFC_20M-CAGE-GSM2323894.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PFC_4F-CAGE-GSM2323889-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PFC_4F-CAGE-GSM2323889.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf PFC_4M-CAGE-GSM2323890-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-PFC_4M-CAGE-GSM2323890.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf TC_10F-CAGE-GSM2323907-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TC_10F-CAGE-GSM2323907.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf TC_10M-CAGE-GSM2323908-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TC_10M-CAGE-GSM2323908.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf TC_1F-CAGE-GSM2323903-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TC_1F-CAGE-GSM2323903.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf TC_1M-CAGE-GSM2323904-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TC_1M-CAGE-GSM2323904.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf TC_20F-CAGE-GSM2323909-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TC_20F-CAGE-GSM2323909.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf TC_20M-CAGE-GSM2323910-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TC_20M-CAGE-GSM2323910.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf TC_4F-CAGE-GSM2323905-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TC_4F-CAGE-GSM2323905.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.gtf TC_4M-CAGE-GSM2323906-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-TC_4M-CAGE-GSM2323906.unique.5p -normalize -singlemodelgenes