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~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
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~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
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