python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Asexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Asexual_Females-pooled -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Males-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Males-pooled -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Sexual_Females-pooled-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Sexual_Females-pooled -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Insects/Daphnia_pulex-V1.0/GCA_000187875.1_V1.0_genomic.chrom.sizes  samtools -paired