Index of /kundaje/marinovg/oak/Promoters/2021-01-29-CAGE-RAMPAGE-datasets/06-Zea_mays-RAMPAGE-PRJNA437131

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]Log.out2021-02-03 10:41 421K 
[ ]SAMstats.files2025-06-03 05:18 227  
[TXT]SAMstats.sh2025-06-03 05:18 1.7K 
[ ]SAMstats.table2021-02-07 21:10 523  
[ ]SAMstats.tar.gz2021-02-07 21:10 596  
[TXT]STAR.sh2025-06-03 05:18 5.3K 
[ ]W22_CNs-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-07-07 10:30 78M 
[ ]W22_CNs-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast2025-07-07 10:31 77M 
[ ]W22_CNs-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast_split.main2025-07-07 10:32 64M 
[ ]W22_CNs-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast_split.secondary2025-07-07 10:32 13M 
[ ]W22_CNs-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-06-09 01:00 78M 
[ ]W22_CNs-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed2025-07-30 19:42 4.5M 
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[ ]W22_CNs-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast_split.main2025-07-15 01:17 3.7M 
[ ]W22_CNs-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast_split.secondary2025-07-15 01:17 751K 
[ ]W22_CNs-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.train.bed2025-07-28 03:59 3.3M 
[ ]W22_CNs-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.val.bed2025-07-28 03:59 574K 
[ ]W22_CNs-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.bed2025-08-03 03:01 4.5M 
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[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-07-07 10:30 81M 
[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast2025-07-07 10:31 81M 
[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast_split.main2025-07-07 10:32 67M 
[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast_split.secondary2025-07-07 10:32 13M 
[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-06-08 22:18 82M 
[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed2025-07-30 19:42 4.8M 
[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast2025-07-15 01:17 4.7M 
[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast_split.main2025-07-15 01:17 3.9M 
[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast_split.secondary2025-07-15 01:17 809K 
[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.train.bed2025-07-28 03:59 3.7M 
[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.val.bed2025-07-28 03:59 649K 
[ ]W22_Ears-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.bed2025-08-03 03:01 4.8M 
[DIR]W22_Ears-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]W22_Endosperm-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-07-07 10:30 85M 
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[ ]W22_Endosperm-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast_split.main2025-07-07 10:32 71M 
[ ]W22_Endosperm-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast_split.secondary2025-07-07 10:32 14M 
[ ]W22_Endosperm-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-06-08 23:28 86M 
[ ]W22_Endosperm-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed2025-07-30 19:42 3.2M 
[ ]W22_Endosperm-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast2025-07-15 01:17 3.2M 
[ ]W22_Endosperm-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast_split.main2025-07-15 01:17 2.6M 
[ ]W22_Endosperm-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast_split.secondary2025-07-15 01:17 538K 
[ ]W22_Endosperm-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.train.bed2025-07-28 03:59 2.3M 
[ ]W22_Endosperm-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.val.bed2025-07-28 03:59 410K 
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[DIR]W22_Endosperm-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]W22_Pollen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-07-07 10:30 45M 
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[ ]W22_Pollen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast_split.main2025-07-07 10:32 37M 
[ ]W22_Pollen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast_split.secondary2025-07-07 10:32 7.4M 
[ ]W22_Pollen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-06-08 20:30 45M 
[ ]W22_Pollen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed2025-07-30 19:42 1.7M 
[ ]W22_Pollen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast2025-07-15 01:17 1.7M 
[ ]W22_Pollen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast_split.main2025-07-15 01:17 1.4M 
[ ]W22_Pollen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast_split.secondary2025-07-15 01:17 288K 
[ ]W22_Pollen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.train.bed2025-07-28 03:59 1.4M 
[ ]W22_Pollen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.val.bed2025-07-28 03:59 227K 
[ ]W22_Pollen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.bed2025-08-03 03:01 1.7M 
[DIR]W22_Pollen-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]W22_Root_Tips-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-07-07 10:30 75M 
[ ]W22_Root_Tips-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast2025-07-07 10:31 74M 
[ ]W22_Root_Tips-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast_split.main2025-07-07 10:32 62M 
[ ]W22_Root_Tips-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed_nochrM_nochloroplast_split.secondary2025-07-07 10:32 12M 
[ ]W22_Root_Tips-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-06-09 00:41 75M 
[ ]W22_Root_Tips-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed2025-07-30 19:42 4.1M 
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[ ]W22_Root_Tips-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast_split.main2025-07-15 01:17 3.4M 
[ ]W22_Root_Tips-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.bed_nochrM_nochloroplast_split.secondary2025-07-15 01:17 695K 
[ ]W22_Root_Tips-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.train.bed2025-07-28 03:59 3.1M 
[ ]W22_Root_Tips-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.2500bp_filter.val.bed2025-07-28 04:00 556K 
[ ]W22_Root_Tips-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.min2RPM.bed2025-08-03 03:02 4.1M 
[DIR]W22_Root_Tips-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]command_generate.config2021-02-03 07:57 413  
[TXT]countlines.sh2025-06-03 05:18 387  
[ ]coverage.files2025-06-03 05:18 297  
[TXT]coverage.sh2025-06-03 05:18 1.9K 
[ ]coverage.table2021-02-07 22:03 11K 
[ ]coverage.tar.gz2021-02-07 22:03 5.8K 
[ ]fastq-lines.tar.gz2021-02-07 21:10 326  
[TXT]makewig.sh2025-06-03 05:18 50K 
[ ]sam_reads_in_genes.files2025-06-03 05:18 297  
[TXT]sam_reads_in_genes.sh2025-06-03 05:18 2.5K 
[ ]sam_reads_in_genes.table2021-02-07 21:10 356  
[ ]sam_reads_in_genes.tar.gz2021-02-07 21:10 500  
[TXT]samtools-index.sh2025-06-03 05:18 436  
[TXT]wget.sh2021-01-31 07:45 6.2K 
[TXT]wigToBigWig.sh2025-06-03 05:18 44K 
[ ]z2025-06-08 14:53 2.6K 
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